C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TRK-fused gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000476228 TFG-004 ENSG00000114354 9606 + 3:100709606-100748964 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000476228
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000476228 11.208±0.00 13.199±0.00 8.303±5.39 16.774±0.00 12.844±0.00 4.276±3.38 15.950±11.67 10.659±9.11 6.995±4.13 14.500±0.00 12.380±8.01 25.664±8.10 14.217±10.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00022O CIL_00022O_0002 CGP 3:100709331-100993515

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004871 IMP signal transducer activity
GO:0005515 IPI:IEA protein binding
GO:0005737 NAS cytoplasm
GO:0007165 IMP signal transduction
GO:0008219 IEA cell death
GO:0043123 IMP positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000065515 Tfg-001 protein_coding Mus_musculus 0 1823
ENSMUST00000127994 Tfg-006 protein_coding Mus_musculus 0 752
ENSMUST00000156522 Tfg-007 protein_coding Mus_musculus 0 708
ENSMUST00000121554 Tfg-005 protein_coding Mus_musculus 0 702
ENSMUST00000136394 Tfg-004 protein_coding Mus_musculus 0 665
ENSMUST00000128551 Tfg-002 protein_coding Mus_musculus 0 536
ENSMUST00000141404 Tfg-003 protein_coding Mus_musculus 0 457

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