C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger with KRAB and SCAN domains 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000536028 ZKSCAN8-004 ENSG00000198315 9606 + 6:28142211-28153079 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045228 Zkscan8-001 protein_coding Mus_musculus 0 667
ENSMUST00000156674 Zkscan8-003 protein_coding Mus_musculus 0 582
ENSMUST00000110481 Zkscan8-002 protein_coding Mus_musculus 0 477
ENSMUST00000099720 Zscan12-002 protein_coding Mus_musculus 6e-35 152
ENSMUST00000053293 Zscan12-001 protein_coding Mus_musculus 6e-35 152
ENSMUST00000062609 Zkscan4-001 protein_coding Mus_musculus 3e-28 130
ENSMUST00000161896 Zkscan5-003 nonsense_mediated_decay Mus_musculus 1e-27 128
ENSMUST00000031601 Zkscan5-002 protein_coding Mus_musculus 1e-27 128
ENSMUST00000085671 Zkscan5-001 protein_coding Mus_musculus 1e-27 128
ENSMUST00000117721 Zkscan3-004 protein_coding Mus_musculus 5e-26 122
ENSMUST00000070785 Zkscan3-003 protein_coding Mus_musculus 5e-26 122
ENSMUST00000116433 Zkscan3-002 protein_coding Mus_musculus 5e-26 122
ENSMUST00000116434 Zkscan3-001 protein_coding Mus_musculus 5e-26 122
ENSMUST00000076238 Gm10065-201 protein_coding Mus_musculus 7e-25 119
ENSMUST00000094116 Zscan25-201 protein_coding Mus_musculus 1e-17 95

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