C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA guanylyltransferase and 5'-phosphatase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000538899 RNGTT-201 ENSG00000111880 9606 - 6:88769770-88963409 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyENST00000538899
Transcript ID Brain Colon Heart Kidney
ENST00000538899 3.701±0.00 2.418±0.00 0.728±0.00 0.635±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006BR CIL_0006BR_0002 CGP 6:88139864-88963596
CIL_0006BS CIL_0006BS_0002 CGP 6:88610266-89085160

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004484 IDA:IEA mRNA guanylyltransferase activity
GO:0004651 IEA polynucleotide 5'-phosphatase activity
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0005525 IEA GTP binding
GO:0005634 TAS:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006370 IDA:IEA 7-methylguanosine mRNA capping
GO:0006396 IDA RNA processing
GO:0006397 IEA mRNA processing
GO:0006470 IEA protein dephosphorylation
GO:0008138 IEA protein tyrosine/serine/threonine phosphatase activity
GO:0008192 IDA RNA guanylyltransferase activity
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0050355 IDA triphosphatase activity
GO:0098507 IEA polynucleotide 5' dephosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108153 Rngtt-002 protein_coding Mus_musculus 0 1751
ENSMUST00000029942 Rngtt-001 protein_coding Mus_musculus 0 1751
ENSMUST00000155397 Rngtt-004 processed_transcript Mus_musculus 0 974
ENSMUST00000146870 Rngtt-005 processed_transcript Mus_musculus 0 586
ENSMUST00000130138 Rngtt-003 processed_transcript Mus_musculus 8e-40 169

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