C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DnaJ (Hsp40) homolog, subfamily C, member 8 pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000554535 DNAJC8P1-001 ENSG00000259022 9606 + 14:35430260-35430631 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonKidneyPlacentaTestisENST00000554535
Transcript ID Brain Breast Colon Kidney Placenta Testis
ENST00000554535 0.104±0.00 0.036±0.00 0.033±0.00 0.037±0.00 0.065±0.00 0.201±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MF CIL_0008MF_0001 VISTA 14:35250818-35851792
CIL_0008ME CIL_0008ME_0001 VISTA 14:35273755-35874460

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000138334 Dnajc8-007 nonsense_mediated_decay Mus_musculus 0 390
ENSMUST00000105939 Dnajc8-006 protein_coding Mus_musculus 0 390
ENSMUST00000105940 Dnajc8-008 protein_coding Mus_musculus 0 390
ENSMUST00000142281 Dnajc8-002 retained_intron Mus_musculus 0 390
ENSMUST00000094657 Dnajc8-001 protein_coding Mus_musculus 0 390
ENSMUST00000156385 Dnajc8-005 protein_coding Mus_musculus 0 244
ENSMUST00000105937 Dnajc8-012 retained_intron Mus_musculus 0 233
ENSMUST00000067467 Dnajc8-010 nonsense_mediated_decay Mus_musculus 1e-34 150
ENSMUST00000150207 Dnajc8-009 protein_coding Mus_musculus 6e-40 169

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