C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chondroitin sulfate proteoglycan 4 pseudogene 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000559989 CSPG4P12-001 ENSG00000259295 9606 + 15:85196444-85213905 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000559989
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000559989 0.213±0.00 0.464±0.00 0.133±0.00 0.507±0.17 0.764±0.24 0.357±0.00 0.459±0.07 0.254±0.00 0.072±0.00 0.690±0.35 0.136±0.09 1.116±0.54 0.119±0.08 2.339±1.73

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113352 Dnm1-002 protein_coding Mus_musculus 2.00386e-43 183
ENSMUST00000091089 Dnm1-005 protein_coding Mus_musculus 2e-38 167
ENSMUST00000145885 Dnm1-011 retained_intron Mus_musculus 3e-36 159
ENSMUST00000155269 Dnm1-012 protein_coding Mus_musculus 8e-32 145
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.000000005 69
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.000003 60
ENSMUST00000146544 Golga2-011 processed_transcript Mus_musculus 0.0005 53

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