C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ceroid-lipofuscinosis, neuronal 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000569030 CLN3-019 ENSG00000188603 9606 - 16:28477516-28491759 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderENST00000569030
Transcript ID Bladder
ENST00000569030 1.059±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TS CIL_0005TS_0001 CGP 16:28477279-28498970

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000046 ISS autophagic vacuole fusion
GO:0000139 IDA Golgi membrane
GO:0001508 ISS action potential
GO:0001575 IMP globoside metabolic process
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005739 TAS mitochondrion
GO:0005764 IDA lysosome
GO:0005765 IEA:IDA lysosomal membrane
GO:0005769 IDA early endosome
GO:0005770 ISS late endosome
GO:0005776 ISS autophagic vacuole
GO:0005783 IDA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0005795 IDA Golgi stack
GO:0005802 IDA trans-Golgi network
GO:0005886 IDA plasma membrane
GO:0005901 IDA caveola
GO:0006520 ISS cellular amino acid metabolic process
GO:0006672 IDA ceramide metabolic process
GO:0006678 IMP glucosylceramide metabolic process
GO:0006681 IMP galactosylceramide metabolic process
GO:0006684 IMP sphingomyelin metabolic process
GO:0006898 IMP receptor-mediated endocytosis
GO:0007034 IBA vacuolar transport
GO:0007040 ISS lysosome organization
GO:0007042 IMP lysosomal lumen acidification
GO:0008021 IDA synaptic vesicle
GO:0008219 IEA cell death
GO:0008306 ISS associative learning
GO:0015809 IDA arginine transport
GO:0016020 IEA membrane
GO:0016021 IEA:IDA integral component of membrane
GO:0016236 NAS macroautophagy
GO:0016242 ISS negative regulation of macroautophagy
GO:0016485 ISS protein processing
GO:0030163 NAS protein catabolic process
GO:0030176 IDA integral component of endoplasmic reticulum membrane
GO:0035235 ISS ionotropic glutamate receptor signaling pathway
GO:0035752 IDA lysosomal lumen pH elevation
GO:0042133 ISS neurotransmitter metabolic process
GO:0042987 IDA amyloid precursor protein catabolic process
GO:0043005 IDA neuron projection
GO:0043066 IMP negative regulation of apoptotic process
GO:0043086 ISS negative regulation of catalytic activity
GO:0043524 ISS negative regulation of neuron apoptotic process
GO:0045121 IDA membrane raft
GO:0045861 ISS negative regulation of proteolysis
GO:0047496 IMP vesicle transport along microtubule
GO:0050885 ISS neuromuscular process controlling balance
GO:0051082 TAS unfolded protein binding
GO:0051480 ISS cytosolic calcium ion homeostasis
GO:0061024 ISS membrane organization

Homologs

No Homologs available.

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