C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000569955 CH17-260O16.1-001 ENSG00000261499 9606 + 17:36274191-36320547 unprocessed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastMuscleTestisENST00000569955
Transcript ID Breast Muscle Testis
ENST00000569955 0.009±0.00 0.024±0.00 0.023±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000154372 Npepps-004 nonsense_mediated_decay Mus_musculus 0 905
ENSMUST00000165216 Npepps-012 protein_coding Mus_musculus 0 905
ENSMUST00000001480 Npepps-001 protein_coding Mus_musculus 0 905
ENSMUST00000172108 Npepps-010 protein_coding Mus_musculus 0 905
ENSMUST00000167806 Npepps-011 protein_coding Mus_musculus 0 905
ENSMUST00000152820 Npepps-006 processed_transcript Mus_musculus 0 682
ENSMUST00000168743 Npepps-014 protein_coding Mus_musculus 0 671
ENSMUST00000165489 Npepps-013 retained_intron Mus_musculus 0 472
ENSMUST00000163164 Npepps-015 protein_coding Mus_musculus 0 401
ENSMUST00000146833 Npepps-005 retained_intron Mus_musculus 0 305
ENSMUST00000163950 Npepps-009 retained_intron Mus_musculus 0 250
ENSMUST00000154917 Npepps-003 nonsense_mediated_decay Mus_musculus 0 241
ENSDART00000147670 npepps-001 protein_coding Danio_rerio 2.94273e-44 183
ENSMUST00000152546 Npepps-002 nonsense_mediated_decay Mus_musculus 4e-27 126

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