C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000572949 USP6-005 ENSG00000129204 9606 + 17:5128392-5175032 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000572949
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000572949 0.149±0.00 0.104±0.00 0.834±0.00 0.178±0.00 0.193±0.00 0.145±0.00 0.446±0.00 0.209±0.00 0.514±0.00 0.363±0.20 0.187±0.07 0.134±0.05 0.424±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 TAS nucleic acid binding
GO:0004197 TAS cysteine-type endopeptidase activity
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005097 IEA Rab GTPase activator activity
GO:0005515 IPI protein binding
GO:0005516 IPI calmodulin binding
GO:0005737 IDA cytoplasm
GO:0005764 TAS lysosome
GO:0005886 IDA plasma membrane
GO:0006464 NAS cellular protein modification process
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0016579 IDA protein deubiquitination
GO:0032313 IEA regulation of Rab GTPase activity
GO:0032851 IEA positive regulation of Rab GTPase activity
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0055037 IDA recycling endosome
GO:0060627 IDA regulation of vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000000821 Usp32-003 nonsense_mediated_decay Mus_musculus 0 3651
ENSMUST00000108075 Usp32-001 protein_coding Mus_musculus 0 2525
ENSMUST00000173156 Usp32-004 protein_coding Mus_musculus 0 379
ENSMUST00000174602 Usp32-005 protein_coding Mus_musculus 0 209

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