C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000574788 USP6-002 ENSG00000129204 9606 + 17:5116438-5174991 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000574788
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000574788 0.153±0.00 0.153±0.00 0.460±0.00 0.146±0.00 0.177±0.07 0.064±0.00 0.127±0.04 0.051±0.04 0.187±0.01 0.288±0.00 0.088±0.02 0.076±0.05 3.423±2.97

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 TAS nucleic acid binding
GO:0004197 TAS cysteine-type endopeptidase activity
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005097 IEA Rab GTPase activator activity
GO:0005515 IPI protein binding
GO:0005516 IPI calmodulin binding
GO:0005737 IDA cytoplasm
GO:0005764 TAS lysosome
GO:0005886 IDA plasma membrane
GO:0006464 NAS cellular protein modification process
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0016579 IDA protein deubiquitination
GO:0032313 IEA regulation of Rab GTPase activity
GO:0032851 IEA positive regulation of Rab GTPase activity
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0055037 IDA recycling endosome
GO:0060627 IDA regulation of vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108075 Usp32-001 protein_coding Mus_musculus 0 3781
ENSMUST00000000821 Usp32-003 nonsense_mediated_decay Mus_musculus 0 2529
ENSMUST00000173156 Usp32-004 protein_coding Mus_musculus 0 379
ENSMUST00000174602 Usp32-005 protein_coding Mus_musculus 0 209

Loading