C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphatidylinositol glycan anchor biosynthesis, class W
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000620233 PIGW-001 ENSG00000277161 9606 + 17:36535555-36539310 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastLiverMuscleOvaryPlacentaENST00000620233
Transcript ID Breast Liver Muscle Ovary Placenta
ENST00000620233 2.266±0.00 2.101±0.00 1.953±0.00 2.880±0.00 1.706±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085R CIL_00085R_0001 VISTA 17:36355391-36956100
CIL_0007YB CIL_0007YB_0001 VISTA 17:36401446-37002205
CIL_0007YB CIL_0007YB_0003 VISTA 17:36402232-37002285
CIL_0005HR CIL_0005HR_0002 CGP 17:36486629-36543435
CIL_0005HS CIL_0005HS_0002 CGP 17:36495633-36543435
CIL_0005HP CIL_0005HP_0002 CGP 17:36535020-36589848

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005789 TAS:IEA endoplasmic reticulum membrane
GO:0006501 TAS C-terminal protein lipidation
GO:0006506 IEA GPI anchor biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0016254 TAS preassembly of GPI anchor in ER membrane
GO:0016746 IEA transferase activity, transferring acyl groups
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108080 Pigw-002 protein_coding Mus_musculus 0 1277
ENSMUST00000067058 Pigw-001 protein_coding Mus_musculus 0 1277
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.00000002 66

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