C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: serine/arginine repetitive matrix 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000001244 srrm1 7955 + 17:25267801-25282040 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000121848 srrm1-201 25267825-25282040 protein_coding
  ENSDART00000148483 srrm1-005 25273100-25274450 retained_intron
  ENSDART00000148856 srrm1-003 25267815-25274183 nonsense_mediated_decay
  ENSDART00000149241 srrm1-001 25267801-25281688 protein_coding
  ENSDART00000149557 srrm1-007 25267821-25278963 nonsense_mediated_decay
  ENSDART00000149747 srrm1-002 25267801-25270263 retained_intron
  ENSDART00000149790 srrm1-004 25267806-25270630 retained_intron
  ENSDART00000150195 srrm1-006 25274139-25277241 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000121848ENSDART00000149241
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000121848 36.908±4.49 17.206±3.06 18.285±0.00 N/A 8.129±0.00
ENSDART00000149241 15.313±0.00 7.424±0.00 6.968±0.00 1.980±0.00 7.494±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002GR CIL_0002GR_0001 CGP 17:25267801-25322065

Gene Ontology
GO IDEvidence TypeGO Description
GO:0006397 IEA mRNA processing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000133226 SRRM1 serine/arginine repetitive matrix 1 protein_coding Homo_sapiens
ENSMUSG00000028809 Srrm1 serine/arginine repetitive matrix 1 protein_coding Mus_musculus

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