C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: serine/arginine repetitive matrix 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028809 Srrm1 10090 - 4:135320484-135353321 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030613 Srrm1-002 135322033-135353136 protein_coding
  ENSMUST00000084846 Srrm1-001 135320491-135353244 protein_coding
  ENSMUST00000105861 Srrm1-003 135320484-135353321 protein_coding
  ENSMUST00000131301 Srrm1-009 135332158-135342462 nonsense_mediated_decay
  ENSMUST00000131373 Srrm1-008 135342411-135353142 protein_coding
  ENSMUST00000134019 Srrm1-005 135345692-135353202 processed_transcript
  ENSMUST00000134854 Srrm1-004 135343637-135353151 retained_intron
  ENSMUST00000136342 Srrm1-015 135321094-135353244 protein_coding
  ENSMUST00000136409 Srrm1-006 135344528-135347204 nonsense_mediated_decay
  ENSMUST00000136570 Srrm1-012 135323768-135324849 retained_intron
  ENSMUST00000140050 Srrm1-013 135322290-135327223 protein_coding
  ENSMUST00000150619 Srrm1-007 135322476-135353134 retained_intron
  ENSMUST00000151251 Srrm1-011 135331478-135338073 retained_intron
  ENSMUST00000154788 Srrm1-010 135338269-135342518 retained_intron
  ENSMUST00000162914 Srrm1-014 135329169-135332233 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000084846ENSMUST00000105861ENSMUST00000131373ENSMUST00000134854ENSMUST00000136342ENSMUST00000140050ENSMUST00000150619
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000084846 N/A 1.188±0.23 12.189±0.00 10.310±1.21 1.892±0.44 2.150±0.00 1.243±0.19 1.554±0.61 2.712±3.37 2.035±0.21 6.116±0.96 4.913±4.53 9.912±0.57 2.019±0.09
ENSMUST00000105861 5.326±1.59 4.023±0.94 14.973±0.66 8.877±1.33 4.047±1.75 5.137±1.15 3.547±0.91 4.113±1.15 8.935±8.42 6.266±0.87 6.807±0.87 7.710±6.52 15.604±4.02 5.827±1.50
ENSMUST00000131373 N/A N/A N/A 80.234±0.00 N/A N/A N/A N/A N/A N/A N/A 125.754±0.00 118.912±30.92 96.320±0.00
ENSMUST00000134854 N/A N/A N/A 7.863±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136342 N/A 1.209±0.00 N/A N/A N/A 2.767±0.45 N/A N/A N/A 1.341±0.00 N/A 1.985±0.38 N/A N/A
ENSMUST00000140050 N/A N/A N/A 101.532±0.00 N/A N/A N/A N/A N/A N/A N/A 160.612±0.00 148.270±31.54 110.257±0.00
ENSMUST00000150619 N/A 1.230±0.17 N/A N/A 1.733±0.39 N/A N/A N/A N/A N/A N/A N/A 6.470±0.00 1.423±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZX CIL_0007ZX_0002 VISTA 4:134905845-135507207

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000375 ISO RNA splicing, via transesterification reactions
GO:0000398 ISO mRNA splicing, via spliceosome
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0005681 IDA spliceosomal complex
GO:0016363 ISO nuclear matrix
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000001244 srrm1 serine/arginine repetitive matrix 1 protein_coding Danio_rerio
ENSG00000133226 SRRM1 serine/arginine repetitive matrix 1 protein_coding Homo_sapiens

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