C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: serine/arginine repetitive matrix 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000133226 SRRM1 9606 + 1:24631716-24673267 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000323848 SRRM1-001 24643012-24673267 protein_coding
  ENST00000374389 SRRM1-002 24643299-24672626 protein_coding
  ENST00000447431 SRRM1-201 24643322-24673262 protein_coding
  ENST00000461768 SRRM1-017 24655011-24666845 processed_transcript
  ENST00000462710 SRRM1-004 24643293-24650086 retained_intron
  ENST00000466910 SRRM1-007 24643272-24647588 processed_transcript
  ENST00000468822 SRRM1-009 24643275-24652514 processed_transcript
  ENST00000470243 SRRM1-014 24651520-24655129 processed_transcript
  ENST00000471693 SRRM1-005 24631716-24635877 processed_transcript
  ENST00000474843 SRRM1-019 24669583-24671469 retained_intron
  ENST00000478890 SRRM1-006 24633066-24650032 processed_transcript
  ENST00000479034 SRRM1-003 24643308-24671595 processed_transcript
  ENST00000485441 SRRM1-011 24649988-24652628 processed_transcript
  ENST00000485541 SRRM1-015 24655022-24663068 processed_transcript
  ENST00000488317 SRRM1-020 24655054-24660975 retained_intron
  ENST00000489130 SRRM1-021 24666555-24669264 retained_intron
  ENST00000490543 SRRM1-012 24643305-24650086 processed_transcript
  ENST00000494934 SRRM1-010 24648534-24652509 retained_intron
  ENST00000495561 SRRM1-013 24648618-24651533 processed_transcript
  ENST00000496882 SRRM1-016 24652497-24662804 processed_transcript
  ENST00000593639 SRRM1-024 24641231-24649987 protein_coding
  ENST00000596378 SRRM1-022 24643559-24669508 protein_coding
  ENST00000600523 SRRM1-023 24643288-24648887 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000323848ENST00000374389ENST00000447431ENST00000462710ENST00000468822ENST00000479034ENST00000490543ENST00000600523
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000323848 N/A N/A 1.541±0.00 N/A 3.603±0.00 3.300±0.00 0.886±0.31 4.060±1.44 1.835±0.00 4.091±1.37 N/A 9.463±4.74 7.408±4.33 13.865±7.12
ENST00000374389 2.948±0.00 N/A N/A N/A N/A N/A 1.109±0.58 3.252±0.00 N/A N/A N/A N/A N/A N/A
ENST00000447431 8.880±0.00 21.365±0.00 N/A 9.701±0.00 5.342±0.00 10.084±0.00 3.687±0.00 9.023±0.00 5.319±0.00 9.790±0.00 4.529±0.00 12.562±3.72 3.317±2.01 18.186±0.00
ENST00000462710 N/A N/A N/A 2.214±0.20 3.408±0.00 3.674±0.00 1.388±0.00 N/A 4.676±0.00 6.382±0.00 N/A 6.147±0.00 N/A N/A
ENST00000468822 N/A N/A N/A N/A 5.009±0.00 4.721±0.00 1.510±0.00 N/A 2.912±0.00 6.169±0.00 N/A N/A N/A N/A
ENST00000479034 N/A N/A 2.011±0.00 2.472±0.00 N/A 3.154±0.00 N/A N/A 1.828±0.00 N/A N/A N/A 14.618±0.00 8.423±0.00
ENST00000490543 N/A N/A 11.294±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000600523 N/A N/A N/A 7.253±0.00 N/A N/A N/A 13.348±0.00 N/A N/A 7.183±0.00 20.013±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZX CIL_0007ZX_0001 VISTA 1:24547215-25148615
CIL_0002GR CIL_0002GR_0002 CGP 1:24631716-24844324

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IEA spliceosomal complex
GO:0005829 TAS cytosol
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006397 IEA mRNA processing
GO:0006406 TAS mRNA export from nucleus
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0031124 TAS mRNA 3'-end processing
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000001244 srrm1 serine/arginine repetitive matrix 1 protein_coding Danio_rerio
ENSMUSG00000028809 Srrm1 serine/arginine repetitive matrix 1 protein_coding Mus_musculus

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