C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: processing of precursor 4, ribonuclease P/MRP subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000003263 pop4 7955 + 7:47573290-47581164 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000011823 pop4-001 47573290-47581164 protein_coding
  ENSDART00000141309 pop4-003 47573342-47573899 retained_intron
  ENSDART00000146388 pop4-002 47573342-47580924 nonsense_mediated_decay

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000011823ENSDART00000146388
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000011823 5.182±1.34 4.310±1.34 21.585±6.29 0.538±0.00 0.690±0.00
ENSDART00000146388 2.573±0.83 3.073±0.00 N/A 1.124±0.00 1.341±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OB CIL_0007OB_0007 UCNEbase 7:47420318-48690356

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000172 IEA ribonuclease MRP complex
GO:0003723 IEA RNA binding
GO:0004540 IEA ribonuclease activity
GO:0005655 IEA nucleolar ribonuclease P complex
GO:0006364 IEA rRNA processing
GO:0006379 IEA mRNA cleavage
GO:0008033 IEA tRNA processing
GO:0030677 IEA ribonuclease P complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000105171 POP4 processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae) protein_coding Homo_sapiens
ENSMUSG00000030423 Pop4 processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae) protein_coding Mus_musculus

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