C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: clock homolog 3 (mouse)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000003631 clock3 7955 + 1:18174899-18208348 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000012552 clock3-201 18176103-18207958 protein_coding
  ENSDART00000103119 clock3-202 18176103-18207958 protein_coding
  ENSDART00000133758 clock3-003 18200875-18204358 retained_intron
  ENSDART00000133959 clock3-001 18174899-18208348 protein_coding
  ENSDART00000136307 clock3-004 18203820-18208115 retained_intron
  ENSDART00000144403 clock3-002 18174902-18179572 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000103119ENSDART00000133959ENSDART00000136307
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000103119 3.358±0.14 1.888±0.00 N/A 0.560±0.00 N/A
ENSDART00000133959 8.170±0.99 3.756±0.00 0.186±0.10 0.773±0.00 1.749±0.00
ENSDART00000136307 N/A 4.737±0.00 N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0004871 IEA signal transducer activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005667 IEA transcription factor complex
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0007165 IEA signal transduction
GO:0007623 IGI circadian rhythm
GO:0009416 IGI response to light stimulus
GO:0009648 IEP photoperiodism
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000134852 CLOCK clock circadian regulator protein_coding Homo_sapiens
ENSMUSG00000029238 Clock circadian locomotor output cycles kaput protein_coding Mus_musculus

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