C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Y box binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000004757 ybx1 7955 - 8:49299968-49308225 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000024320 ybx1-001 49299968-49308225 protein_coding
  ENSDART00000110512 ybx1-201 49299970-49308162 protein_coding
  ENSDART00000126513 ybx1-003 49305105-49308158 retained_intron
  ENSDART00000128057 ybx1-002 49303503-49308162 retained_intron

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000024320ENSDART00000110512
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000024320 60.335±30.59 462.570±250.66 71.208±0.00 111.758±0.00 640.423±0.00
ENSDART00000110512 268.129±12.41 2254.495±884.98 1652.445±487.37 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002SI CIL_0002SI_0001 CGP 8:49299968-49362538

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0006355 IEA regulation of transcription, DNA-dependent

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000065978 YBX1 Y box binding protein 1 protein_coding Homo_sapiens
ENSMUSG00000028639 Ybx1 Y box protein 1 protein_coding Mus_musculus

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