C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002SI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000004757-ENSDARG00000041530 CGP 7955 8:49299968-49362538
GeneTranscriptPositionBiotype
ENSDARG00000004757 (ybx1)
Y box binding protein 1 		ENSDART00000024320 (ybx1-001) 49299968-49308225 protein_coding
ENSDART00000110512 (ybx1-201) 49299970-49308162 protein_coding
ENSDART00000126513 (ybx1-003) 49305105-49308158 retained_intron
ENSDART00000128057 (ybx1-002) 49303503-49308162 retained_intron
ENSDARG00000041530 (ppih)
peptidylprolyl isomerase H (cyclophilin H) 		ENSDART00000060877 (ppih-001) 49315123-49362538 protein_coding
ENSDART00000060880 (ppih-201) 49315585-49362538 protein_coding
ENSDART00000060883 (ppih-002) 49308843-49362301 protein_coding
ENSDART00000147606 (ppih-003) 49315391-49362253 protein_coding
ENSDARG00000092141 (si:dkeyp-100a1.6)
si:dkeyp-100a1.6 		ENSDART00000137319 (si:dkeyp-100a1.6-001) 49344293-49354011 protein_coding
ENSDARG00000097853 (si:dkeyp-100a1.7)
si:dkeyp-100a1.7 		ENSDART00000156735 (si:dkeyp-100a1.7-001) 49310801-49315172 antisense

Danio rerio Ensembl (Zv9)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0002SI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028639-ENSMUSG00000060288 CGP 10090 4:119277981-119320546
GeneTranscriptPositionBiotype
ENSMUSG00000028639 (Ybx1)
Y box protein 1 		ENSMUST00000079644 (Ybx1-001) 119277981-119294604 protein_coding
ENSMUST00000127737 (Ybx1-004) 119277990-119282792 protein_coding
ENSMUST00000139897 (Ybx1-003) 119282273-119294490 processed_transcript
ENSMUST00000142884 (Ybx1-005) 119285002-119294480 processed_transcript
ENSMUST00000144992 (Ybx1-006) 119281143-119282186 processed_transcript
ENSMUST00000145976 (Ybx1-007) 119278167-119279450 processed_transcript
ENSMUST00000152733 (Ybx1-002) 119293624-119294500 processed_transcript
ENSMUSG00000060288 (Ppih)
peptidyl prolyl isomerase H 		ENSMUST00000056458 (Ppih-004) 119300010-119320484 protein_coding
ENSMUST00000106317 (Ppih-002) 119311314-119320499 protein_coding
ENSMUST00000106318 (Ppih-001) 119300010-119320546 protein_coding
ENSMUST00000106319 (Ppih-005) 119300010-119320497 protein_coding
ENSMUST00000106321 (Ppih-003) 119307160-119320484 protein_coding
ENSMUST00000147077 (Ppih-006) 119306585-119320417 protein_coding

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002SI_0001ENSDARG00000004757ENSDART00000024320ENSDART00000110512ENSDART00000126513ENSDART00000128057ENSDARG00000041530ENSDART00000060877ENSDART00000060880ENSDART00000060883ENSDART00000147606ENSDARG00000092141ENSDART00000137319ENSDARG00000097853ENSDART00000156735CIL_0002SI_0002ENSMUSG00000028639ENSMUST00000079644ENSMUST00000127737ENSMUST00000139897ENSMUST00000142884ENSMUST00000144992ENSMUST00000145976ENSMUST00000152733ENSMUSG00000060288ENSMUST00000056458ENSMUST00000106317ENSMUST00000106318ENSMUST00000106319ENSMUST00000106321ENSMUST00000147077
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002SI_0001ENSDARG00000004757ENSDART00000024320ENSDART00000110512ENSDARG00000041530ENSDART00000060877ENSDART00000060880ENSDART00000060883ENSDARG00000092141ENSDART00000137319ENSDARG00000097853ENSDART00000156735CIL_0002SI_0002ENSMUSG00000028639ENSMUST00000079644ENSMUST00000127737ENSMUST00000139897ENSMUST00000145976ENSMUST00000152733ENSMUSG00000060288ENSMUST00000056458ENSMUST00000106317ENSMUST00000106318ENSMUST00000106319ENSMUST00000106321
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000004757 ENSDART00000024320 N/A N/A N/A 60.335±30.59 N/A N/A 462.570±250.66 71.208±0.00 111.758±0.00 N/A 640.423±0.00 N/A N/A N/A
ENSDART00000110512 N/A N/A N/A 268.129±12.41 N/A N/A 2254.495±884.98 1652.445±487.37 N/A N/A N/A N/A N/A N/A
ENSDART00000126513 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000128057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000041530 ENSDART00000060877 N/A N/A N/A 5.729±3.29 N/A N/A 4.836±1.19 10.070±2.17 0.313±0.00 N/A 1.021±0.00 N/A N/A N/A
ENSDART00000060880 N/A N/A N/A N/A N/A N/A N/A N/A 0.232±0.00 N/A 0.492±0.00 N/A N/A N/A
ENSDART00000060883 N/A N/A N/A 0.249±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000147606 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000092141 ENSDART00000137319 N/A N/A N/A 0.973±0.00 N/A N/A 0.142±0.00 0.123±0.00 N/A N/A 0.172±0.00 N/A N/A N/A
ENSDARG00000097853 ENSDART00000156735 N/A N/A N/A 0.239±0.00 N/A N/A N/A 0.374±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028639 ENSMUST00000079644 89.224±10.94 27.874±3.60 108.886±17.62 193.854±106.00 64.752±11.96 86.281±9.66 144.720±4.68 112.674±12.44 90.349±80.09 94.982±10.40 295.840±7.64 173.750±114.71 164.114±91.93 306.173±213.87
ENSMUST00000127737 N/A N/A N/A N/A N/A N/A N/A 25.500±0.00 9.935±1.50 N/A N/A 71.137±0.00 44.317±27.25 118.222±16.52
ENSMUST00000139897 N/A 52.291±9.34 N/A N/A N/A N/A N/A N/A N/A N/A N/A 66.831±21.88 N/A N/A
ENSMUST00000142884 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144992 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145976 N/A N/A N/A 107.571±0.00 N/A N/A N/A N/A N/A N/A N/A 377.114±0.00 228.881±93.99 330.518±0.00
ENSMUST00000152733 N/A 13.032±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000060288 ENSMUST00000056458 3.343±0.00 0.290±0.00 2.401±0.00 5.614±1.09 2.065±1.08 2.298±1.20 N/A 1.253±0.27 7.991±5.69 0.923±0.00 0.911±0.38 3.255±2.48 7.846±2.65 4.189±0.76
ENSMUST00000106317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.264±0.00
ENSMUST00000106318 3.243±1.12 1.348±0.44 8.549±2.07 18.632±11.03 3.943±2.23 1.528±0.90 2.180±0.22 3.229±0.34 16.949±17.12 1.253±0.49 3.582±0.64 5.942±5.58 21.296±11.88 10.719±4.16
ENSMUST00000106319 N/A N/A N/A N/A N/A 2.090±0.00 N/A N/A 0.742±0.00 N/A 0.564±0.00 1.625±0.09 18.083±13.98 N/A
ENSMUST00000106321 1.976±0.01 0.815±0.48 2.445±0.00 2.079±0.69 1.653±0.49 1.584±0.34 0.933±0.15 1.723±0.24 2.549±2.14 0.853±0.37 0.461±0.10 2.084±1.04 4.846±2.57 1.255±0.02
ENSMUST00000147077 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Loading