C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Y box binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000065978 YBX1 9606 + 1:42682395-42702349 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000321358 YBX1-001 42682427-42702349 protein_coding
  ENST00000332220 YBX1-004 42682440-42697262 protein_coding
  ENST00000436427 YBX1-002 42682987-42702349 protein_coding
  ENST00000467957 YBX1-003 42683156-42697211 processed_transcript
  ENST00000616651 YBX1-201 42682395-42702342 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000321358ENST00000436427ENST00000616651
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000321358 277.096±0.00 216.404±0.00 38.599±0.00 22.981±2.91 141.762±77.34 145.163±71.40 139.588±87.15 103.462±31.85 77.900±4.79 103.495±79.94 311.564±185.15 131.336±71.85 249.833±61.51 464.706±0.00
ENST00000436427 133.367±0.00 158.351±0.00 N/A 16.395±0.00 119.583±0.00 151.636±0.00 N/A 30.659±0.00 39.357±0.00 48.850±0.00 118.216±0.00 N/A N/A 215.298±0.00
ENST00000616651 N/A N/A N/A N/A N/A 19.515±0.00 9.280±0.00 N/A 14.144±0.00 26.827±0.00 N/A 174.946±95.00 153.562±0.00 1140.660±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PM CIL_0008PM_0001 VISTA 1:42456139-43057783

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0001701 IEA in utero embryonic development
GO:0003676 IEA nucleic acid binding
GO:0003677 IDA:IEA DNA binding
GO:0003690 TAS double-stranded DNA binding
GO:0003697 IEA single-stranded DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005634 TAS nucleus
GO:0005654 TAS nucleoplasm
GO:0005689 IDA U12-type spliceosomal complex
GO:0005737 IDA cytoplasm
GO:0006355 IDA:IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0010494 IDA cytoplasmic stress granule
GO:0030529 IDA ribonucleoprotein complex
GO:0031965 IDA nuclear membrane
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044822 IDA poly(A) RNA binding
GO:0051154 IEA negative regulation of striated muscle cell differentiation
GO:0051781 IEA positive regulation of cell division
GO:0070062 IDA extracellular vesicular exosome
GO:0070934 IMP CRD-mediated mRNA stabilization
GO:0070937 IDA CRD-mediated mRNA stability complex
GO:0071204 ISS histone pre-mRNA 3'end processing complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004757 ybx1 Y box binding protein 1 protein_coding Danio_rerio
ENSMUSG00000028639 Ybx1 Y box protein 1 protein_coding Mus_musculus

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