C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 39a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000011613 rbm39a 7955 + 11:25272921-25278982 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000017973 rbm39a-001 25272944-25278980 protein_coding
  ENSDART00000131365 rbm39a-006 25272964-25275631 protein_coding
  ENSDART00000133679 rbm39a-012 25272936-25276800 protein_coding
  ENSDART00000134009 rbm39a-007 25273590-25276752 retained_intron
  ENSDART00000135435 rbm39a-004 25272938-25278980 protein_coding
  ENSDART00000135970 rbm39a-003 25272955-25273889 processed_transcript
  ENSDART00000136735 rbm39a-010 25276887-25277863 retained_intron
  ENSDART00000137251 rbm39a-008 25272952-25274481 retained_intron
  ENSDART00000138314 rbm39a-009 25272921-25278982 nonsense_mediated_decay
  ENSDART00000139298 rbm39a-002 25272933-25278980 processed_transcript
  ENSDART00000147746 rbm39a-011 25276569-25277575 retained_intron
  ENSDART00000148153 rbm39a-005 25272944-25275622 processed_transcript

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000017973ENSDART00000135435ENSDART00000137251ENSDART00000139298ENSDART00000148153
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000017973 40.449±6.27 17.550±7.87 22.416±0.00 N/A 8.049±0.00
ENSDART00000135435 18.714±4.18 35.217±23.15 82.431±19.09 2.963±0.00 12.408±0.00
ENSDART00000137251 N/A 27.340±3.44 37.653±4.01 N/A N/A
ENSDART00000139298 N/A 7.680±2.14 8.566±0.00 2.863±0.00 6.940±0.00
ENSDART00000148153 15.401±3.57 15.361±1.21 N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000131051 RBM39 RNA binding motif protein 39 protein_coding Homo_sapiens
ENSMUSG00000027620 Rbm39 RNA binding motif protein 39 protein_coding Mus_musculus

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