C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 39
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000131051 RBM39 9606 - 20:35703609-35742312 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000253363 RBM39-002 35703610-35741951 protein_coding
  ENST00000338163 RBM39-008 35703611-35742221 nonsense_mediated_decay
  ENST00000361162 RBM39-001 35703610-35742312 protein_coding
  ENST00000374038 RBM39-020 35721867-35742258 protein_coding
  ENST00000397370 RBM39-013 35734876-35742232 protein_coding
  ENST00000403542 RBM39-006 35703611-35742274 nonsense_mediated_decay
  ENST00000412738 RBM39-017 35724570-35742113 nonsense_mediated_decay
  ENST00000416108 RBM39-043 35729472-35741626 nonsense_mediated_decay
  ENST00000416529 RBM39-024 35734796-35741979 nonsense_mediated_decay
  ENST00000425184 RBM39-021 35725065-35740597 nonsense_mediated_decay
  ENST00000426951 RBM39-039 35731360-35740837 protein_coding
  ENST00000429968 RBM39-005 35704326-35742256 nonsense_mediated_decay
  ENST00000433027 RBM39-045 35732045-35742219 nonsense_mediated_decay
  ENST00000434927 RBM39-018 35724676-35741609 protein_coding
  ENST00000442447 RBM39-016 35731916-35742178 processed_transcript
  ENST00000444878 RBM39-007 35704326-35742248 nonsense_mediated_decay
  ENST00000448303 RBM39-035 35704703-35729344 protein_coding
  ENST00000449489 RBM39-044 35731946-35740887 nonsense_mediated_decay
  ENST00000453310 RBM39-012 35734519-35742258 nonsense_mediated_decay
  ENST00000455343 RBM39-019 35729322-35741958 nonsense_mediated_decay
  ENST00000461283 RBM39-009 35703610-35739037 retained_intron
  ENST00000461849 RBM39-014 35740099-35742238 retained_intron
  ENST00000463004 RBM39-004 35703609-35742236 retained_intron
  ENST00000463098 RBM39-003 35739103-35742227 processed_transcript
  ENST00000465158 RBM39-031 35704405-35713366 retained_intron
  ENST00000468086 RBM39-041 35708992-35710566 retained_intron
  ENST00000470563 RBM39-027 35705262-35713415 processed_transcript
  ENST00000471635 RBM39-030 35708804-35713096 retained_intron
  ENST00000475651 RBM39-028 35709033-35716787 retained_intron
  ENST00000476806 RBM39-029 35704326-35714251 nonsense_mediated_decay
  ENST00000477334 RBM39-026 35731360-35739140 retained_intron
  ENST00000481037 RBM39-022 35725124-35739283 retained_intron
  ENST00000482563 RBM39-011 35704377-35707988 retained_intron
  ENST00000487604 RBM39-025 35732060-35739189 processed_transcript
  ENST00000490354 RBM39-034 35704400-35705399 retained_intron
  ENST00000490484 RBM39-036 35713808-35725112 retained_intron
  ENST00000492779 RBM39-010 35704328-35732806 retained_intron
  ENST00000493853 RBM39-042 35740458-35741598 retained_intron
  ENST00000494274 RBM39-040 35713318-35725063 processed_transcript
  ENST00000495293 RBM39-032 35704326-35713203 retained_intron
  ENST00000496183 RBM39-033 35704377-35707361 retained_intron
  ENST00000498280 RBM39-037 35734767-35736641 processed_transcript
  ENST00000528062 RBM39-015 35703898-35742238 protein_coding
  ENST00000615771 RBM39-047 35710328-35721839 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000253363ENST00000361162ENST00000374038ENST00000403542ENST00000434927ENST00000444878ENST00000448303ENST00000461283ENST00000463004ENST00000490484ENST00000492779ENST00000496183ENST00000528062ENST00000615771
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000253363 N/A N/A N/A 8.049±0.00 11.602±0.00 N/A 6.256±0.00 N/A 5.610±0.00 15.032±0.00 N/A 18.001±3.47 13.367±3.36 N/A
ENST00000361162 N/A N/A 3.566±0.00 5.609±0.00 N/A 5.539±0.00 N/A N/A N/A N/A 4.928±0.00 17.510±0.00 8.117±1.43 N/A
ENST00000374038 43.367±0.00 N/A N/A 28.263±0.00 N/A 34.417±0.00 16.888±0.00 N/A 13.002±0.00 48.162±0.00 N/A N/A 20.704±0.00 N/A
ENST00000403542 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.921±0.00 N/A N/A N/A
ENST00000434927 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 54.538±0.00 28.026±0.00 31.408±0.00
ENST00000444878 N/A 22.803±0.00 N/A N/A N/A N/A N/A N/A 5.004±0.00 20.927±0.00 3.475±0.00 18.539±0.00 15.623±1.70 16.447±0.00
ENST00000448303 N/A N/A N/A N/A N/A 22.276±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461283 12.273±0.00 28.140±0.00 N/A 14.995±0.00 12.022±0.00 22.797±0.00 6.147±0.00 35.777±0.00 3.957±0.00 12.779±0.00 4.921±0.00 34.039±0.00 N/A 43.016±0.00
ENST00000463004 N/A 9.398±0.00 3.340±0.00 N/A 7.492±2.84 N/A 2.580±0.10 7.358±3.65 4.068±2.56 26.871±0.00 1.927±0.00 11.017±5.63 N/A 10.985±0.00
ENST00000490484 N/A N/A N/A 37.078±0.00 N/A N/A N/A N/A N/A N/A 10.595±0.00 N/A N/A N/A
ENST00000492779 N/A N/A 3.795±0.00 N/A 15.598±0.00 8.108±0.00 3.794±0.00 7.526±0.00 9.630±0.00 N/A N/A N/A N/A N/A
ENST00000496183 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.850±0.00 N/A N/A N/A
ENST00000528062 N/A N/A N/A N/A N/A 10.166±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 148.454±0.00 61.101±0.00 65.489±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000WY CIL_0000WY_0001 CGP 20:35699272-35742312
CIL_0000X2 CIL_0000X2_0001 CGP 20:35703609-35950381

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005815 IDA microtubule organizing center
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006396 TAS RNA processing
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0015630 IDA microtubule cytoskeleton
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011613 rbm39a RNA binding motif protein 39a protein_coding Danio_rerio
ENSMUSG00000027620 Rbm39 RNA binding motif protein 39 protein_coding Mus_musculus

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