C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 39
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027620 Rbm39 10090 - 2:156147239-156180238 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029149 Rbm39-018 156147249-156180167 protein_coding
  ENSMUST00000109584 Rbm39-022 156174774-156180238 protein_coding
  ENSMUST00000109587 Rbm39-001 156147239-156180238 protein_coding
  ENSMUST00000126992 Rbm39-020 156161829-156180142 protein_coding
  ENSMUST00000128243 Rbm39-012 156178559-156180212 retained_intron
  ENSMUST00000130516 Rbm39-006 156163986-156168148 retained_intron
  ENSMUST00000131625 Rbm39-016 156162813-156169231 processed_transcript
  ENSMUST00000132929 Rbm39-007 156177161-156180196 retained_intron
  ENSMUST00000135274 Rbm39-017 156161831-156165212 retained_intron
  ENSMUST00000137297 Rbm39-014 156172954-156177901 retained_intron
  ENSMUST00000137340 Rbm39-004 156178561-156180145 retained_intron
  ENSMUST00000137566 Rbm39-009 156174689-156180156 nonsense_mediated_decay
  ENSMUST00000138381 Rbm39-015 156167538-156177731 retained_intron
  ENSMUST00000140001 Rbm39-010 156170040-156177383 processed_transcript
  ENSMUST00000142071 Rbm39-026 156147249-156180149 nonsense_mediated_decay
  ENSMUST00000146288 Rbm39-021 156164806-156180159 protein_coding
  ENSMUST00000146297 Rbm39-003 156147246-156179580 protein_coding
  ENSMUST00000146549 Rbm39-008 156172833-156180161 nonsense_mediated_decay
  ENSMUST00000147098 Rbm39-013 156172932-156180147 nonsense_mediated_decay
  ENSMUST00000148794 Rbm39-019 156149236-156164923 protein_coding
  ENSMUST00000150272 Rbm39-011 156164920-156172961 processed_transcript
  ENSMUST00000152919 Rbm39-005 156177361-156180149 nonsense_mediated_decay
  ENSMUST00000153514 Rbm39-025 156147940-156180184 nonsense_mediated_decay
  ENSMUST00000154677 Rbm39-024 156174685-156179912 nonsense_mediated_decay
  ENSMUST00000155837 Rbm39-002 156147940-156180176 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029149ENSMUST00000109584ENSMUST00000109587ENSMUST00000128243ENSMUST00000132929ENSMUST00000146288ENSMUST00000146297ENSMUST00000148794ENSMUST00000153514ENSMUST00000155837
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029149 9.861±1.77 12.612±2.38 20.001±5.44 28.717±3.07 10.699±2.11 7.874±1.94 7.656±1.93 11.094±3.35 20.554±14.12 16.513±1.65 11.912±1.91 7.304±1.72 36.534±8.30 N/A
ENSMUST00000109584 N/A 24.843±12.29 N/A N/A N/A N/A N/A N/A 4.804±0.00 N/A N/A 6.853±0.00 N/A N/A
ENSMUST00000109587 N/A N/A 14.776±1.96 18.016±1.07 N/A N/A N/A N/A 16.213±2.60 N/A 6.734±2.49 N/A 20.259±1.27 N/A
ENSMUST00000128243 10.199±0.91 10.653±0.72 N/A N/A 9.868±2.42 9.968±1.00 N/A N/A 4.287±0.00 13.977±0.62 N/A 9.466±2.81 N/A N/A
ENSMUST00000132929 N/A 32.116±8.97 N/A N/A 21.000±0.25 12.335±2.27 N/A N/A N/A 17.208±3.78 N/A 17.495±3.73 N/A N/A
ENSMUST00000146288 N/A 22.140±0.00 N/A 118.859±0.00 N/A N/A N/A N/A N/A N/A N/A 323.573±0.00 208.400±80.80 107.768±0.00
ENSMUST00000146297 N/A N/A 13.785±0.00 28.909±0.00 9.975±0.00 N/A N/A N/A N/A N/A N/A 61.396±8.58 31.431±0.00 N/A
ENSMUST00000148794 N/A N/A N/A 100.548±0.00 N/A N/A N/A N/A N/A N/A N/A 224.392±0.00 175.949±25.44 48.780±0.00
ENSMUST00000153514 N/A 10.871±2.03 N/A N/A 6.569±2.52 8.092±2.22 N/A 4.870±0.00 4.676±0.00 8.626±0.00 N/A 8.257±1.54 27.767±0.00 N/A
ENSMUST00000155837 8.161±1.12 9.484±1.54 N/A N/A 7.203±0.89 5.874±0.00 4.631±1.34 8.014±1.33 5.144±1.48 11.100±0.41 5.137±0.07 8.606±3.18 35.498±8.23 11.321±7.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0002 VISTA 2:155562263-156164147
CIL_0000WY CIL_0000WY_0002 CGP 2:156144039-156180238
CIL_0000X2 CIL_0000X2_0002 CGP 2:156147239-156309952

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003713 TAS transcription coactivator activity
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 TAS nucleus
GO:0005815 IEA microtubule organizing center
GO:0006351 TAS transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0015630 IEA microtubule cytoskeleton
GO:0044822 IEA poly(A) RNA binding
GO:2001141 TAS regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011613 rbm39a RNA binding motif protein 39a protein_coding Danio_rerio
ENSG00000131051 RBM39 RNA binding motif protein 39 protein_coding Homo_sapiens

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