C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: mutS homolog 6 (E. coli)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000011666 msh6 7955 - 13:49380013-49402601 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000018840 msh6-001 49380013-49402601 protein_coding
  ENSDART00000143175 msh6-003 49396904-49401488 protein_coding
  ENSDART00000143315 msh6-004 49390485-49402530 protein_coding
  ENSDART00000146105 msh6-002 49395170-49401495 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000018840
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000018840 2.406±0.24 4.166±0.00 11.096±0.00 1.243±0.00 0.740±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000228 IBA nuclear chromosome
GO:0000400 IBA four-way junction DNA binding
GO:0000710 IBA meiotic mismatch repair
GO:0003677 IEA DNA binding
GO:0003684 IBA damaged DNA binding
GO:0003690 IDA double-stranded DNA binding
GO:0005524 IEA ATP binding
GO:0006200 IBA ATP catabolic process
GO:0006298 IEA mismatch repair
GO:0007131 IBA reciprocal meiotic recombination
GO:0008094 IBA DNA-dependent ATPase activity
GO:0008630 IBA intrinsic apoptotic signaling pathway in response to DNA damage
GO:0009411 IBA response to UV
GO:0016446 IBA somatic hypermutation of immunoglobulin genes
GO:0030983 IEA mismatched DNA binding
GO:0032137 IGI guanine/thymine mispair binding
GO:0032138 IBA single base insertion or deletion binding
GO:0032301 IBA MutSalpha complex
GO:0043570 IMP maintenance of DNA repeat elements
GO:0045190 IBA isotype switching
GO:0045910 IBA negative regulation of DNA recombination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000116062 MSH6 mutS homolog 6 protein_coding Homo_sapiens
ENSMUSG00000005370 Msh6 mutS homolog 6 (E. coli) protein_coding Mus_musculus

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