C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000011821 plod2 7955 + 24:5317429-5394427 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000005901 plod2-001 5317473-5394427 protein_coding
  ENSDART00000106488 plod2-002 5317473-5394427 protein_coding
  ENSDART00000128182 plod2-003 5317429-5347948 retained_intron
  ENSDART00000140035 plod2-004 5317432-5342234 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverMuscleENSDART00000005901ENSDART00000106488
Transcript ID Brain Heart Liver Muscle
ENSDART00000005901 N/A 1.658±0.00 N/A N/A
ENSDART00000106488 0.399±0.17 N/A 0.016±0.00 2.593±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00057Z CIL_00057Z_0001 CGP 24:5287891-5394427
CIL_0005X5 CIL_0005X5_0001 CGP 24:5317429-5797178

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005506 IEA iron ion binding
GO:0005581 IEA collagen
GO:0005783 IEA endoplasmic reticulum
GO:0008475 IEA procollagen-lysine 5-dioxygenase activity
GO:0016491 IEA oxidoreductase activity
GO:0016705 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016706 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0031418 IEA L-ascorbic acid binding
GO:0051213 IEA dioxygenase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000152952 PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 protein_coding Homo_sapiens
ENSMUSG00000032374 Plod2 procollagen lysine, 2-oxoglutarate 5-dioxygenase 2 protein_coding Mus_musculus

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