C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005X5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000011821-ENSDARG00000055629 CGP 7955 24:5317429-5797178
GeneTranscriptPositionBiotype
ENSDARG00000011821 (plod2)
procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 		ENSDART00000005901 (plod2-001) 5317473-5394427 protein_coding
ENSDART00000106488 (plod2-002) 5317473-5394427 protein_coding
ENSDART00000128182 (plod2-003) 5317429-5347948 retained_intron
ENSDART00000140035 (plod2-004) 5317432-5342234 retained_intron
ENSDARG00000055629 (C24H3orf58 (2 of 2))
chromosome 3 open reading frame 58 		ENSDART00000078019 (C24H3orf58 (2 of 2)-201) 5736543-5775335 protein_coding
ENSDART00000137293 (C24H3orf58 (2 of 2)-001) 5736541-5797178 protein_coding

Danio rerio Ensembl (Zv9)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0005X5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032374-ENSMUSG00000045414 CGP 10090 9:92542223-94538081
GeneTranscriptPositionBiotype
ENSMUSG00000032374 (Plod2)
procollagen lysine, 2-oxoglutarate 5-dioxygenase 2 		ENSMUST00000070522 (Plod2-001) 92542223-92608428 protein_coding
ENSMUST00000160142 (Plod2-003) 92573588-92591684 retained_intron
ENSMUST00000160359 (Plod2-002) 92542264-92608420 protein_coding
ENSMUST00000161906 (Plod2-004) 92595345-92601066 retained_intron
ENSMUST00000190075 (Plod2-005) 92601342-92602617 retained_intron
ENSMUSG00000045414 (1190002N15Rik)
RIKEN cDNA 1190002N15 gene 		ENSMUST00000113028 (1190002N15Rik-001) 94517864-94538081 protein_coding
ENSMUSG00000098171 (Gm9621)
predicted gene 9621 		ENSMUST00000183322 (Gm9621-001) 93391368-93392370 processed_pseudogene
ENSMUSG00000099823 (RP24-331H14.3)
predicted gene 28054 		ENSMUST00000187280 (RP24-331H14.3-001) 92895832-92915791 lincRNA
ENSMUSG00000100294 (RP24-331H14.1)
RIKEN cDNA 1700034K08 gene 		ENSMUST00000185830 (RP24-331H14.1-004) 92979914-92990733 lincRNA
ENSMUST00000188082 (RP24-331H14.1-001) 92979914-93005733 lincRNA
ENSMUST00000188921 (RP24-331H14.1-003) 93001620-93005730 lincRNA
ENSMUST00000190562 (RP24-331H14.1-002) 92979995-93005739 lincRNA
ENSMUSG00000101309 (RP24-331H14.2)
predicted gene 29397 		ENSMUST00000185205 (RP24-331H14.2-001) 92976226-92976558 processed_pseudogene
ENSMUSG00000101357 (RP23-298I7.3)
predicted gene 2495 		ENSMUST00000191160 (RP23-298I7.3-001) 92612512-92612977 processed_pseudogene
ENSMUSG00000101734 (RP23-142I8.1)
RIKEN cDNA 4933400C23 gene 		ENSMUST00000188610 (RP23-142I8.1-001) 92718716-92795711 lincRNA
ENSMUST00000189773 (RP23-142I8.1-002) 92717456-92749216 lincRNA
ENSMUSG00000101949 (RP23-19M11.4)
predicted gene 5370 		ENSMUST00000187187 (RP23-19M11.4-001) 94407553-94408126 processed_pseudogene

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005X5_0001ENSDARG00000011821ENSDART00000005901ENSDART00000106488ENSDART00000128182ENSDART00000140035ENSDARG00000055629ENSDART00000078019ENSDART00000137293CIL_0005X5_0002ENSMUSG00000032374ENSMUST00000070522ENSMUST00000160142ENSMUST00000160359ENSMUST00000161906ENSMUST00000190075ENSMUSG00000045414ENSMUST00000113028ENSMUSG00000098171ENSMUST00000183322ENSMUSG00000099823ENSMUST00000187280ENSMUSG00000100294ENSMUST00000185830ENSMUST00000188082ENSMUST00000188921ENSMUST00000190562ENSMUSG00000101309ENSMUST00000185205ENSMUSG00000101357ENSMUST00000191160ENSMUSG00000101734ENSMUST00000188610ENSMUST00000189773ENSMUSG00000101949ENSMUST00000187187
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005X5_0001ENSDARG00000011821ENSDART00000005901ENSDART00000106488ENSDARG00000055629ENSDART00000078019ENSDART00000137293CIL_0005X5_0002ENSMUSG00000032374ENSMUST00000070522ENSMUST00000160359ENSMUST00000190075ENSMUSG00000045414ENSMUST00000113028ENSMUSG00000098171ENSMUST00000183322ENSMUSG00000099823ENSMUST00000187280ENSMUSG00000100294ENSMUST00000185830ENSMUST00000188082ENSMUST00000188921ENSMUST00000190562ENSMUSG00000101309ENSMUST00000185205ENSMUSG00000101357ENSMUST00000191160ENSMUSG00000101734ENSMUST00000188610ENSMUST00000189773ENSMUSG00000101949ENSMUST00000187187
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000011821 ENSDART00000005901 N/A N/A N/A N/A N/A N/A 1.658±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000106488 N/A N/A N/A 0.399±0.17 N/A N/A N/A N/A 0.016±0.00 N/A 2.593±0.00 N/A N/A N/A
ENSDART00000128182 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000140035 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000055629 ENSDART00000078019 N/A N/A N/A N/A N/A N/A 1.499±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000137293 N/A N/A N/A 4.573±2.57 N/A N/A 0.720±0.09 2.189±0.00 0.158±0.00 N/A 1.516±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032374 ENSMUST00000070522 1.483±1.02 16.238±4.65 N/A 2.202±1.24 3.024±1.14 1.374±0.54 0.917±0.19 6.250±0.67 0.776±0.69 2.292±0.65 0.128±0.04 27.623±15.11 8.654±2.78 1.297±0.56
ENSMUST00000160142 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160359 8.794±7.16 62.420±12.51 13.154±2.40 0.982±0.51 1.496±0.32 3.720±0.69 3.632±0.73 1.329±0.28 0.552±0.42 9.028±0.55 0.337±0.16 39.142±26.20 8.049±5.83 0.667±0.37
ENSMUST00000161906 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190075 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.255±0.00 N/A N/A N/A
ENSMUSG00000045414 ENSMUST00000113028 9.070±1.62 18.002±2.88 10.004±0.71 8.864±3.38 11.410±5.44 11.991±1.19 6.879±0.36 2.882±0.45 7.453±1.24 46.778±5.32 1.272±0.32 34.535±14.11 4.969±3.27 0.897±0.17
ENSMUSG00000098171 ENSMUST00000183322 N/A N/A N/A 0.015±0.00 N/A N/A 0.031±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000099823 ENSMUST00000187280 N/A N/A N/A 0.033±0.00 N/A N/A N/A N/A N/A N/A N/A 0.023±0.00 0.040±0.00 0.017±0.00
ENSMUSG00000100294 ENSMUST00000185830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.195±0.14 0.050±0.04 N/A
ENSMUST00000188082 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.126±0.00 2.461±0.87
ENSMUST00000188921 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.357±0.00 12.410±0.00
ENSMUST00000190562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.043±0.00 3.920±0.48
ENSMUSG00000101309 ENSMUST00000185205 0.285±0.00 N/A 0.050±0.00 0.077±0.03 0.567±0.28 0.568±0.01 0.856±0.63 0.480±0.28 0.083±0.06 0.841±0.07 N/A N/A 0.031±0.00 0.484±0.00
ENSMUSG00000101357 ENSMUST00000191160 0.318±0.01 0.156±0.06 0.025±0.00 0.060±0.02 N/A 0.159±0.00 0.081±0.00 N/A N/A N/A N/A 0.413±0.30 0.045±0.00 0.314±0.08
ENSMUSG00000101734 ENSMUST00000188610 N/A N/A 0.009±0.00 0.008±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.051±0.00
ENSMUST00000189773 N/A N/A 0.031±0.00 0.102±0.00 0.074±0.00 N/A N/A 0.193±0.00 N/A N/A N/A 0.094±0.07 N/A 0.262±0.15
ENSMUSG00000101949 ENSMUST00000187187 N/A N/A N/A N/A N/A N/A N/A 0.079±0.00 0.020±0.00 N/A N/A N/A N/A 0.102±0.04

Loading