C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: procollagen lysine, 2-oxoglutarate 5-dioxygenase 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032374 Plod2 10090 + 9:92542223-92608428 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000070522 Plod2-001 92542223-92608428 protein_coding
  ENSMUST00000160142 Plod2-003 92573588-92591684 retained_intron
  ENSMUST00000160359 Plod2-002 92542264-92608420 protein_coding
  ENSMUST00000161906 Plod2-004 92595345-92601066 retained_intron
  ENSMUST00000190075 Plod2-005 92601342-92602617 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000070522ENSMUST00000160359ENSMUST00000190075
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000070522 1.483±1.02 16.238±4.65 N/A 2.202±1.24 3.024±1.14 1.374±0.54 0.917±0.19 6.250±0.67 0.776±0.69 2.292±0.65 0.128±0.04 27.623±15.11 8.654±2.78 1.297±0.56
ENSMUST00000160359 8.794±7.16 62.420±12.51 13.154±2.40 0.982±0.51 1.496±0.32 3.720±0.69 3.632±0.73 1.329±0.28 0.552±0.42 9.028±0.55 0.337±0.16 39.142±26.20 8.049±5.83 0.667±0.37
ENSMUST00000190075 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.255±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00057Z CIL_00057Z_0002 CGP 9:92457373-92608428
CIL_0005X5 CIL_0005X5_0002 CGP 9:92542223-94538081

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001666 IEA response to hypoxia
GO:0005506 IEA iron ion binding
GO:0005783 IEA endoplasmic reticulum
GO:0008475 IEA procollagen-lysine 5-dioxygenase activity
GO:0016020 IEA membrane
GO:0031418 IEA L-ascorbic acid binding
GO:0055114 IEA oxidation-reduction process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011821 plod2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 protein_coding Danio_rerio
ENSG00000152952 PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 protein_coding Homo_sapiens

Loading