C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear cap binding protein subunit 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000014898 ncbp2 7955 - 22:41975987-41980251 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000008365 ncbp2-001 41975987-41980251 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000008365
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000008365 6.865±4.13 5.921±4.62 3.593±3.49 1.456±0.00 3.721±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00070W CIL_00070W_0001 CGP 22:41963964-41980251

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000184 IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000339 IEA RNA cap binding
GO:0000340 ISS RNA 7-methylguanosine cap binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005622 ISS intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005846 IEA nuclear cap binding complex
GO:0006370 IEA 7-methylguanosine mRNA capping
GO:0006397 IEA mRNA processing
GO:0006408 ISS snRNA export from nucleus
GO:0006417 IEA regulation of translation
GO:0006810 IEA transport
GO:0008380 ISS RNA splicing
GO:0031047 IEA gene silencing by RNA
GO:0045292 IEA mRNA cis splicing, via spliceosome
GO:0046833 ISS positive regulation of RNA export from nucleus
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000114503 NCBP2 nuclear cap binding protein subunit 2, 20kDa protein_coding Homo_sapiens
ENSG00000170935 NCBP2L nuclear cap binding protein subunit 2-like protein_coding Homo_sapiens
ENSMUSG00000022774 Ncbp2 nuclear cap binding protein subunit 2 protein_coding Mus_musculus

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