C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear cap binding protein subunit 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022774 Ncbp2 10090 + 16:31948513-31961781 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023460 Ncbp2-001 31948513-31958472 protein_coding
  ENSMUST00000115178 Ncbp2-002 31948613-31957176 protein_coding
  ENSMUST00000126215 Ncbp2-004 31948606-31961781 processed_transcript
  ENSMUST00000140965 Ncbp2-003 31948601-31957148 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023460ENSMUST00000115178ENSMUST00000126215
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023460 11.439±2.74 29.625±0.81 31.767±1.04 6.792±0.90 2.210±0.00 5.686±0.32 8.696±0.75 12.475±8.36 10.372±2.38 4.613±0.89 14.479±5.89 17.787±6.05 10.817±0.49
ENSMUST00000115178 N/A N/A 60.466±0.00 N/A 4.077±0.00 N/A 10.473±0.00 1.929±0.00 N/A N/A 110.124±0.00 104.523±27.00 108.848±86.30
ENSMUST00000126215 N/A N/A 59.426±0.00 N/A N/A N/A N/A N/A N/A N/A 96.729±0.00 138.131±55.86 95.825±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000184 ISS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000339 IEA RNA cap binding
GO:0000340 ISS RNA 7-methylguanosine cap binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005654 ISS nucleoplasm
GO:0005737 ISS cytoplasm
GO:0005845 ISS mRNA cap binding complex
GO:0005846 IEA nuclear cap binding complex
GO:0006370 ISS 7-methylguanosine mRNA capping
GO:0006408 ISS snRNA export from nucleus
GO:0006446 ISS regulation of translational initiation
GO:0008380 ISS RNA splicing
GO:0031047 IEA gene silencing by RNA
GO:0044822 IEA poly(A) RNA binding
GO:0045292 ISS mRNA cis splicing, via spliceosome
GO:0046833 ISS positive regulation of RNA export from nucleus
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014898 ncbp2 nuclear cap binding protein subunit 2 protein_coding Danio_rerio
ENSG00000114503 NCBP2 nuclear cap binding protein subunit 2, 20kDa protein_coding Homo_sapiens

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