C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear cap binding protein subunit 2, 20kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000114503 NCBP2 9606 - 3:196935402-196942597 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000321256 NCBP2-001 196935407-196942597 protein_coding
  ENST00000411704 NCBP2-010 196937023-196942436 protein_coding
  ENST00000422610 NCBP2-011 196936926-196941906 protein_coding
  ENST00000427641 NCBP2-004 196935434-196942560 protein_coding
  ENST00000428425 NCBP2-005 196935409-196942594 nonsense_mediated_decay
  ENST00000447325 NCBP2-007 196935406-196942377 protein_coding
  ENST00000452404 NCBP2-006 196936777-196942440 protein_coding
  ENST00000455953 NCBP2-012 196939255-196941856 protein_coding
  ENST00000463783 NCBP2-002 196935407-196942560 retained_intron
  ENST00000467803 NCBP2-014 196935402-196937690 processed_transcript
  ENST00000468923 NCBP2-008 196936833-196942523 retained_intron
  ENST00000479647 NCBP2-013 196937340-196941769 retained_intron
  ENST00000482976 NCBP2-009 196938903-196942508 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000321256ENST00000427641ENST00000428425ENST00000447325ENST00000452404ENST00000463783ENST00000468923ENST00000482976
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000321256 N/A 8.944±0.00 3.131±0.00 10.349±1.20 7.299±0.38 10.764±5.04 4.360±2.32 9.735±7.21 3.562±0.50 4.550±0.38 3.360±1.69 19.882±7.92 13.080±2.25 22.764±0.00
ENST00000427641 8.077±0.00 12.592±0.00 N/A N/A N/A N/A N/A 5.628±2.85 3.487±0.87 3.367±0.00 1.916±0.09 8.270±3.82 N/A 4.528±0.00
ENST00000428425 12.742±0.00 8.798±0.00 N/A 14.071±0.00 14.434±0.00 7.657±0.00 5.814±0.00 N/A 2.655±0.00 3.266±1.27 N/A 8.475±0.00 6.832±0.00 5.126±1.16
ENST00000447325 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.162±0.00 N/A N/A N/A
ENST00000452404 N/A N/A 2.719±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 19.127±0.00 15.369±0.00 24.453±0.00
ENST00000463783 N/A N/A N/A N/A 1.749±0.00 1.699±0.00 0.330±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000468923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.787±0.00 N/A 9.836±0.00
ENST00000482976 N/A N/A N/A N/A N/A N/A N/A 2.825±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00070W CIL_00070W_0002 CGP 3:196867856-196942597

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000184 IDA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000339 IEA:NAS RNA cap binding
GO:0000340 IDA RNA 7-methylguanosine cap binding
GO:0000387 TAS spliceosomal snRNP assembly
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005845 IDA mRNA cap binding complex
GO:0005846 IEA nuclear cap binding complex
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006370 IDA 7-methylguanosine mRNA capping
GO:0006406 TAS mRNA export from nucleus
GO:0006408 ISS snRNA export from nucleus
GO:0006446 IDA regulation of translational initiation
GO:0008334 TAS histone mRNA metabolic process
GO:0008380 ISS RNA splicing
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0031047 IEA gene silencing by RNA
GO:0031124 TAS mRNA 3'-end processing
GO:0034660 TAS ncRNA metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045292 IEA:IDA mRNA cis splicing, via spliceosome
GO:0046833 ISS positive regulation of RNA export from nucleus
GO:0050434 TAS positive regulation of viral transcription

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014898 ncbp2 nuclear cap binding protein subunit 2 protein_coding Danio_rerio
ENSMUSG00000022774 Ncbp2 nuclear cap binding protein subunit 2 protein_coding Mus_musculus

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