C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: forkhead box F1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000015399 foxf1 7955 + 18:30791440-30794568 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000012374 foxf1-001 30791440-30794568 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000012374
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000012374 0.045±0.00 0.150±0.05 0.644±0.00 0.064±0.00 0.096±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000YG CIL_0000YG_0001 CGP 18:30512223-30794568
CIL_000576 CIL_000576_0001 CGP 18:30791440-30893894

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IBA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003690 IBA double-stranded DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003705 IBA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005667 IBA transcription factor complex
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0007389 IBA pattern specification process
GO:0008134 IBA transcription factor binding
GO:0008301 IBA DNA binding, bending
GO:0009790 IBA embryo development
GO:0009888 IBA tissue development
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IBA positive regulation of transcription from RNA polymerase II promoter
GO:0051090 IBA regulation of sequence-specific DNA binding transcription factor activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000103241 FOXF1 forkhead box F1 protein_coding Homo_sapiens
ENSMUSG00000042812 Foxf1 forkhead box F1 protein_coding Mus_musculus

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