| Source ID |
Type |
Tax ID |
Position |
| ENSMUSG00000041515-ENSMUSG00000042812 |
CGP |
10090 |
8:120736358-121088144  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0000YG_0003 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0000YG_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000YG_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSDARG00000015399' => 'forkhead box F1',
'ENSDARG00000056407' => 'interferon regulatory factor 8',
'ENSG00000103241' => 'forkhead box F1',
'ENSG00000140968' => 'interferon regulatory factor 8',
'ENSG00000168367' => 'long intergenic non-protein coding RNA 917',
'ENSG00000199949' => 'Y RNA',
'ENSG00000261177' => null,
'ENSG00000268078' => null,
'ENSG00000268388' => 'FOXF1 adjacent non-coding developmental regulatory RNA',
'ENSG00000268473' => null,
'ENSG00000268505' => null,
'ENSG00000268532' => null,
'ENSG00000268754' => 'long intergenic non-protein coding RNA 1081',
'ENSG00000268804' => null,
'ENSG00000269186' => 'long intergenic non-protein coding RNA 1082',
'ENSG00000269667' => null,
'ENSG00000269826' => null,
'ENSG00000270058' => null,
'ENSG00000274134' => 'microRNA 6774',
'ENSG00000275388' => null,
'ENSG00000277360' => null,
'ENSG00000279604' => null,
'ENSMUSG00000041515' => 'interferon regulatory factor 8',
'ENSMUSG00000042812' => 'forkhead box F1',
'ENSMUSG00000097087' => 'predicted gene, 26878',
'ENSMUSG00000097336' => 'Foxf1 adjacent non-coding developmental regulatory RNA',
'ENSMUSG00000098560' => 'predicted gene, 27530',
'ENSMUSG00000101886' => 'predicted gene 28324'
),
'gene_name_arr' => array(
'ENSDARG00000015399' => 'foxf1',
'ENSDARG00000056407' => 'irf8',
'ENSG00000103241' => 'FOXF1',
'ENSG00000140968' => 'IRF8',
'ENSG00000168367' => 'LINC00917',
'ENSG00000199949' => 'Y_RNA',
'ENSG00000261177' => 'RP11-805I24.1',
'ENSG00000268078' => 'RP11-805I24.4',
'ENSG00000268388' => 'FENDRR',
'ENSG00000268473' => 'RP11-158I3.1',
'ENSG00000268505' => 'RP11-805I24.3',
'ENSG00000268532' => 'RP11-514D23.1',
'ENSG00000268754' => 'LINC01081',
'ENSG00000268804' => 'RP11-542M13.3',
'ENSG00000269186' => 'LINC01082',
'ENSG00000269667' => 'RP11-542M13.2',
'ENSG00000269826' => 'RP11-158I3.3',
'ENSG00000270058' => 'RP11-514D23.3',
'ENSG00000274134' => 'MIR6774',
'ENSG00000275388' => 'AC040170.1',
'ENSG00000277360' => 'AC009108.2',
'ENSG00000279604' => 'RP11-542M13.1',
'ENSMUSG00000041515' => 'Irf8',
'ENSMUSG00000042812' => 'Foxf1',
'ENSMUSG00000097087' => 'Gm26878',
'ENSMUSG00000097336' => 'Fendrr',
'ENSMUSG00000098560' => 'Gm27530',
'ENSMUSG00000101886' => 'RP23-80D9.2'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 21 => 'Bladder',
(int) 27 => 'Brain',
(int) 39 => 'Breast',
(int) 52 => 'Colon',
(int) 67 => 'Heart',
(int) 78 => 'Kidney',
(int) 92 => 'Liver',
(int) 105 => 'Lung',
(int) 118 => 'Muscle',
(int) 125 => 'Ovary',
(int) 140 => 'Placenta',
(int) 155 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 58,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENSDART00000012374' => array(
'start' => '30791440',
'end' => '30794568',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'foxf1-001'
),
'ENSDART00000078894' => array(
'start' => '30512223',
'end' => '30518127',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'irf8-001'
),
'ENST00000262426' => array(
'start' => '86510527',
'end' => '86515418',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXF1-001'
),
'ENST00000268638' => array(
'start' => '85898803',
'end' => '85922609',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-001'
),
'ENST00000562492' => array(
'start' => '85914043',
'end' => '85921371',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-009'
),
'ENST00000563180' => array(
'start' => '85902689',
'end' => '85909882',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-002'
),
'ENST00000564056' => array(
'start' => '85903131',
'end' => '85913312',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'IRF8-007'
),
'ENST00000564617' => array(
'start' => '85902815',
'end' => '85913160',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-011'
),
'ENST00000564803' => array(
'start' => '85902838',
'end' => '85918800',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-006'
),
'ENST00000565552' => array(
'start' => '85899163',
'end' => '85903156',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-004'
),
'ENST00000566369' => array(
'start' => '85908988',
'end' => '85922296',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-003'
),
'ENST00000569145' => array(
'start' => '85913974',
'end' => '85918489',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-008'
),
'ENST00000569607' => array(
'start' => '85914313',
'end' => '85921274',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-010'
),
'ENST00000570088' => array(
'start' => '85899188',
'end' => '85903531',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'IRF8-005'
),
'ENST00000594203' => array(
'start' => '86331844',
'end' => '86345644',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-002'
),
'ENST00000595169' => array(
'start' => '86337995',
'end' => '86349639',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-004'
),
'ENST00000598994' => array(
'start' => '86338450',
'end' => '86349680',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-007'
),
'ENST00000599619' => array(
'start' => '86338134',
'end' => '86349683',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-005'
),
'ENST00000599664' => array(
'start' => '86338249',
'end' => '86349683',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-006'
),
'ENST00000600892' => array(
'start' => '86331844',
'end' => '86337556',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-003'
),
'ENST00000601556' => array(
'start' => '86331850',
'end' => '86345679',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-001'
),
'ENST00000363079' => array(
'start' => '86275429',
'end' => '86275523',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Y_RNA.1-295'
),
'ENST00000563931' => array(
'start' => '86081409',
'end' => '86089526',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-805I24.1-001'
),
'ENST00000600234' => array(
'start' => '86158206',
'end' => '86158798',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-805I24.4-001'
),
'ENST00000593604' => array(
'start' => '86490268',
'end' => '86508877',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-007'
),
'ENST00000594398' => array(
'start' => '86490226',
'end' => '86498585',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-004'
),
'ENST00000595886' => array(
'start' => '86474529',
'end' => '86508860',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-003'
),
'ENST00000597578' => array(
'start' => '86490183',
'end' => '86508876',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-006'
),
'ENST00000598996' => array(
'start' => '86487706',
'end' => '86490879',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-002'
),
'ENST00000599749' => array(
'start' => '86487737',
'end' => '86509099',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-001'
),
'ENST00000600553' => array(
'start' => '86477124',
'end' => '86490881',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-005'
),
'ENST00000596612' => array(
'start' => '86434830',
'end' => '86435884',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-158I3.1-001'
),
'ENST00000599841' => array(
'start' => '86192793',
'end' => '86198913',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-805I24.3-001'
),
'ENST00000599486' => array(
'start' => '86286427',
'end' => '86293389',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-514D23.1-001'
),
'ENST00000597373' => array(
'start' => '86225580',
'end' => '86275745',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01081-001'
),
'ENST00000598933' => array(
'start' => '85935281',
'end' => '85936223',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-542M13.3-001'
),
'ENST00000601250' => array(
'start' => '86196181',
'end' => '86199720',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01082-001'
),
'ENST00000599411' => array(
'start' => '85981750',
'end' => '85984723',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-542M13.2-001'
),
'ENST00000595705' => array(
'start' => '86347387',
'end' => '86349611',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-158I3.3-001'
),
'ENST00000602425' => array(
'start' => '86221423',
'end' => '86222729',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-514D23.3-001'
),
'ENST00000614651' => array(
'start' => '85918347',
'end' => '85918416',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR6774-201'
),
'ENST00000613490' => array(
'start' => '86278538',
'end' => '86278605',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC040170.1-201'
),
'ENST00000616245' => array(
'start' => '86510780',
'end' => '86510877',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC009108.2-201'
),
'ENST00000624955' => array(
'start' => '86035627',
'end' => '86036419',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-542M13.1-001'
),
'ENSMUST00000047737' => array(
'start' => '120736358',
'end' => '120756694',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Irf8-001'
),
'ENSMUST00000160388' => array(
'start' => '120745480',
'end' => '120753733',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Irf8-006'
),
'ENSMUST00000160594' => array(
'start' => '120752209',
'end' => '120753711',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Irf8-007'
),
'ENSMUST00000160943' => array(
'start' => '120739990',
'end' => '120755204',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Irf8-004'
),
'ENSMUST00000162001' => array(
'start' => '120738639',
'end' => '120755581',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Irf8-003'
),
'ENSMUST00000162658' => array(
'start' => '120736385',
'end' => '120753478',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Irf8-005'
),
'ENSMUST00000162775' => array(
'start' => '120736359',
'end' => '120743234',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Irf8-002'
),
'ENSMUST00000181504' => array(
'start' => '121084386',
'end' => '121088144',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxf1-001'
),
'ENSMUST00000181778' => array(
'start' => '120880206',
'end' => '120882481',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26878-001'
),
'ENSMUST00000181231' => array(
'start' => '121058803',
'end' => '121060413',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Fendrr-002'
),
'ENSMUST00000181530' => array(
'start' => '121054882',
'end' => '121083032',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Fendrr-001'
),
'ENSMUST00000182264' => array(
'start' => '121059119',
'end' => '121083110',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Fendrr-003'
),
'ENSMUST00000184096' => array(
'start' => '121084609',
'end' => '121084706',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm27530-201'
),
'ENSMUST00000187913' => array(
'start' => '121002927',
'end' => '121003190',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-80D9.2-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0000YG_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000YG_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0000YG_0001' => array(
'genes_in_region' => array(
'ENSDARG00000015399' => array(
[maximum depth reached]
),
'ENSDARG00000056407' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Muscle'
)
),
'CIL_0000YG_0002' => array(
'genes_in_region' => array(
'ENSG00000103241' => array(
[maximum depth reached]
),
'ENSG00000140968' => array(
[maximum depth reached]
),
'ENSG00000168367' => array(
[maximum depth reached]
),
'ENSG00000261177' => array(
[maximum depth reached]
),
'ENSG00000268078' => array(
[maximum depth reached]
),
'ENSG00000268388' => array(
[maximum depth reached]
),
'ENSG00000268505' => array(
[maximum depth reached]
),
'ENSG00000268532' => array(
[maximum depth reached]
),
'ENSG00000268754' => array(
[maximum depth reached]
),
'ENSG00000268804' => array(
[maximum depth reached]
),
'ENSG00000269186' => array(
[maximum depth reached]
),
'ENSG00000269667' => array(
[maximum depth reached]
),
'ENSG00000269826' => array(
[maximum depth reached]
),
'ENSG00000270058' => array(
[maximum depth reached]
),
'ENSG00000274134' => array(
[maximum depth reached]
),
'ENSG00000279604' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Muscle',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Liver',
(int) 29 => 'Muscle',
(int) 30 => 'Breast',
(int) 31 => 'Colon',
(int) 32 => 'Heart',
(int) 33 => 'Kidney',
(int) 34 => 'Lung',
(int) 35 => 'Adipose',
(int) 36 => 'Brain',
(int) 37 => 'Heart',
(int) 38 => 'Kidney',
(int) 39 => 'Breast',
(int) 40 => 'Colon',
(int) 41 => 'Ovary',
(int) 42 => 'Placenta',
(int) 43 => 'Testis',
(int) 44 => 'Ovary',
(int) 45 => 'Testis',
(int) 46 => 'Adipose',
(int) 47 => 'Bladder',
(int) 48 => 'Breast',
(int) 49 => 'Heart',
(int) 50 => 'Kidney',
(int) 51 => 'Ovary',
(int) 52 => 'Placenta',
(int) 53 => 'Testis',
(int) 54 => 'Bladder',
(int) 55 => 'Liver',
(int) 56 => 'Testis',
(int) 57 => 'Testis',
(int) 58 => 'Testis',
(int) 59 => 'Adipose',
(int) 60 => 'Adrenal',
(int) 61 => 'Brain',
(int) 62 => 'Breast',
(int) 63 => 'Colon',
(int) 64 => 'Heart',
(int) 65 => 'Kidney',
(int) 66 => 'Liver',
(int) 67 => 'Lung',
(int) 68 => 'Muscle',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Testis',
(int) 72 => 'Colon',
(int) 73 => 'Lung',
(int) 74 => 'Ovary',
(int) 75 => 'Placenta',
(int) 76 => 'Testis',
(int) 77 => 'Breast',
(int) 78 => 'Kidney',
(int) 79 => 'Placenta',
(int) 80 => 'Testis',
(int) 81 => 'Testis',
(int) 82 => 'Adipose',
(int) 83 => 'Adrenal',
(int) 84 => 'Brain',
(int) 85 => 'Breast',
(int) 86 => 'Colon',
(int) 87 => 'Heart',
(int) 88 => 'Kidney',
(int) 89 => 'Liver',
(int) 90 => 'Lung',
(int) 91 => 'Ovary',
(int) 92 => 'Placenta',
(int) 93 => 'Testis',
(int) 94 => 'Adrenal',
(int) 95 => 'Bladder',
(int) 96 => 'Brain',
(int) 97 => 'Breast',
(int) 98 => 'Colon',
(int) 99 => 'Heart',
(int) 100 => 'Kidney',
(int) 101 => 'Liver',
(int) 102 => 'Lung',
(int) 103 => 'Ovary',
(int) 104 => 'Placenta',
(int) 105 => 'Liver',
(int) 106 => 'Lung',
(int) 107 => 'Placenta',
(int) 108 => 'Testis',
(int) 109 => 'Adipose',
(int) 110 => 'Adrenal',
(int) 111 => 'Brain',
(int) 112 => 'Breast',
(int) 113 => 'Colon',
(int) 114 => 'Kidney',
(int) 115 => 'Liver',
(int) 116 => 'Lung',
(int) 117 => 'Ovary',
(int) 118 => 'Placenta',
(int) 119 => 'Testis',
(int) 120 => 'Ovary',
(int) 121 => 'Testis',
(int) 122 => 'Bladder',
(int) 123 => 'Colon',
(int) 124 => 'Lung',
(int) 125 => 'Placenta',
(int) 126 => 'Testis',
(int) 127 => 'Adipose',
(int) 128 => 'Adrenal',
(int) 129 => 'Breast',
(int) 130 => 'Colon',
(int) 131 => 'Kidney',
(int) 132 => 'Ovary',
(int) 133 => 'Placenta',
(int) 134 => 'Testis',
(int) 135 => 'Breast',
(int) 136 => 'Colon',
(int) 137 => 'Liver',
(int) 138 => 'Lung',
(int) 139 => 'Ovary',
(int) 140 => 'Placenta',
(int) 141 => 'Testis',
(int) 142 => 'Adipose',
(int) 143 => 'Adrenal',
(int) 144 => 'Brain',
(int) 145 => 'Breast',
(int) 146 => 'Colon',
(int) 147 => 'Heart',
(int) 148 => 'Kidney',
(int) 149 => 'Liver',
(int) 150 => 'Lung',
(int) 151 => 'Muscle',
(int) 152 => 'Ovary',
(int) 153 => 'Testis',
(int) 154 => 'Adipose',
(int) 155 => 'Adrenal',
(int) 156 => 'Brain',
(int) 157 => 'Colon',
(int) 158 => 'Lung',
(int) 159 => 'Ovary',
(int) 160 => 'Placenta',
(int) 161 => 'Testis',
(int) 162 => 'Adipose',
(int) 163 => 'Adrenal',
(int) 164 => 'Brain',
(int) 165 => 'Colon',
(int) 166 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSDARG00000015399' => 'forkhead box F1',
'ENSDARG00000056407' => 'interferon regulatory factor 8',
'ENSG00000103241' => 'forkhead box F1',
'ENSG00000140968' => 'interferon regulatory factor 8',
'ENSG00000168367' => 'long intergenic non-protein coding RNA 917',
'ENSG00000199949' => 'Y RNA',
'ENSG00000261177' => null,
'ENSG00000268078' => null,
'ENSG00000268388' => 'FOXF1 adjacent non-coding developmental regulatory RNA',
'ENSG00000268473' => null,
'ENSG00000268505' => null,
'ENSG00000268532' => null,
'ENSG00000268754' => 'long intergenic non-protein coding RNA 1081',
'ENSG00000268804' => null,
'ENSG00000269186' => 'long intergenic non-protein coding RNA 1082',
'ENSG00000269667' => null,
'ENSG00000269826' => null,
'ENSG00000270058' => null,
'ENSG00000274134' => 'microRNA 6774',
'ENSG00000275388' => null,
'ENSG00000277360' => null,
'ENSG00000279604' => null,
'ENSMUSG00000041515' => 'interferon regulatory factor 8',
'ENSMUSG00000042812' => 'forkhead box F1',
'ENSMUSG00000097087' => 'predicted gene, 26878',
'ENSMUSG00000097336' => 'Foxf1 adjacent non-coding developmental regulatory RNA',
'ENSMUSG00000098560' => 'predicted gene, 27530',
'ENSMUSG00000101886' => 'predicted gene 28324'
)
$gene_name_arr = array(
'ENSDARG00000015399' => 'foxf1',
'ENSDARG00000056407' => 'irf8',
'ENSG00000103241' => 'FOXF1',
'ENSG00000140968' => 'IRF8',
'ENSG00000168367' => 'LINC00917',
'ENSG00000199949' => 'Y_RNA',
'ENSG00000261177' => 'RP11-805I24.1',
'ENSG00000268078' => 'RP11-805I24.4',
'ENSG00000268388' => 'FENDRR',
'ENSG00000268473' => 'RP11-158I3.1',
'ENSG00000268505' => 'RP11-805I24.3',
'ENSG00000268532' => 'RP11-514D23.1',
'ENSG00000268754' => 'LINC01081',
'ENSG00000268804' => 'RP11-542M13.3',
'ENSG00000269186' => 'LINC01082',
'ENSG00000269667' => 'RP11-542M13.2',
'ENSG00000269826' => 'RP11-158I3.3',
'ENSG00000270058' => 'RP11-514D23.3',
'ENSG00000274134' => 'MIR6774',
'ENSG00000275388' => 'AC040170.1',
'ENSG00000277360' => 'AC009108.2',
'ENSG00000279604' => 'RP11-542M13.1',
'ENSMUSG00000041515' => 'Irf8',
'ENSMUSG00000042812' => 'Foxf1',
'ENSMUSG00000097087' => 'Gm26878',
'ENSMUSG00000097336' => 'Fendrr',
'ENSMUSG00000098560' => 'Gm27530',
'ENSMUSG00000101886' => 'RP23-80D9.2'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000YG_0001',
'tax_id' => '7955',
'chromosome' => '18',
'seq_start' => '30512223',
'seq_end' => '30794568',
'region_length' => '282345',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000056407-ENSDARG00000015399'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000YG_0002',
'tax_id' => '9606',
'chromosome' => '16',
'seq_start' => '85898803',
'seq_end' => '86515418',
'region_length' => '616615',
'region_type' => 'CGP',
'el_id' => 'ENSG00000140968-ENSG00000103241'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000YG_0003',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '120736358',
'seq_end' => '121088144',
'region_length' => '351786',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000041515-ENSMUSG00000042812'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 21 => 'Bladder',
(int) 27 => 'Brain',
(int) 39 => 'Breast',
(int) 52 => 'Colon',
(int) 67 => 'Heart',
(int) 78 => 'Kidney',
(int) 92 => 'Liver',
(int) 105 => 'Lung',
(int) 118 => 'Muscle',
(int) 125 => 'Ovary',
(int) 140 => 'Placenta',
(int) 155 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 58
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENSDART00000012374' => array(
'start' => '30791440',
'end' => '30794568',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'foxf1-001'
),
'ENSDART00000078894' => array(
'start' => '30512223',
'end' => '30518127',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'irf8-001'
),
'ENST00000262426' => array(
'start' => '86510527',
'end' => '86515418',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXF1-001'
),
'ENST00000268638' => array(
'start' => '85898803',
'end' => '85922609',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-001'
),
'ENST00000562492' => array(
'start' => '85914043',
'end' => '85921371',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-009'
),
'ENST00000563180' => array(
'start' => '85902689',
'end' => '85909882',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-002'
),
'ENST00000564056' => array(
'start' => '85903131',
'end' => '85913312',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'IRF8-007'
),
'ENST00000564617' => array(
'start' => '85902815',
'end' => '85913160',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-011'
),
'ENST00000564803' => array(
'start' => '85902838',
'end' => '85918800',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-006'
),
'ENST00000565552' => array(
'start' => '85899163',
'end' => '85903156',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-004'
),
'ENST00000566369' => array(
'start' => '85908988',
'end' => '85922296',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-003'
),
'ENST00000569145' => array(
'start' => '85913974',
'end' => '85918489',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-008'
),
'ENST00000569607' => array(
'start' => '85914313',
'end' => '85921274',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-010'
),
'ENST00000570088' => array(
'start' => '85899188',
'end' => '85903531',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'IRF8-005'
),
'ENST00000594203' => array(
'start' => '86331844',
'end' => '86345644',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-002'
),
'ENST00000595169' => array(
'start' => '86337995',
'end' => '86349639',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-004'
),
'ENST00000598994' => array(
'start' => '86338450',
'end' => '86349680',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-007'
),
'ENST00000599619' => array(
'start' => '86338134',
'end' => '86349683',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-005'
),
'ENST00000599664' => array(
'start' => '86338249',
'end' => '86349683',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-006'
),
'ENST00000600892' => array(
'start' => '86331844',
'end' => '86337556',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-003'
),
'ENST00000601556' => array(
'start' => '86331850',
'end' => '86345679',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-001'
),
'ENST00000363079' => array(
'start' => '86275429',
'end' => '86275523',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Y_RNA.1-295'
),
'ENST00000563931' => array(
'start' => '86081409',
'end' => '86089526',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-805I24.1-001'
),
'ENST00000600234' => array(
'start' => '86158206',
'end' => '86158798',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-805I24.4-001'
),
'ENST00000593604' => array(
'start' => '86490268',
'end' => '86508877',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-007'
),
'ENST00000594398' => array(
'start' => '86490226',
'end' => '86498585',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-004'
),
'ENST00000595886' => array(
'start' => '86474529',
'end' => '86508860',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-003'
),
'ENST00000597578' => array(
'start' => '86490183',
'end' => '86508876',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-006'
),
'ENST00000598996' => array(
'start' => '86487706',
'end' => '86490879',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-002'
),
'ENST00000599749' => array(
'start' => '86487737',
'end' => '86509099',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-001'
),
'ENST00000600553' => array(
'start' => '86477124',
'end' => '86490881',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-005'
),
'ENST00000596612' => array(
'start' => '86434830',
'end' => '86435884',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-158I3.1-001'
),
'ENST00000599841' => array(
'start' => '86192793',
'end' => '86198913',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-805I24.3-001'
),
'ENST00000599486' => array(
'start' => '86286427',
'end' => '86293389',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-514D23.1-001'
),
'ENST00000597373' => array(
'start' => '86225580',
'end' => '86275745',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01081-001'
),
'ENST00000598933' => array(
'start' => '85935281',
'end' => '85936223',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-542M13.3-001'
),
'ENST00000601250' => array(
'start' => '86196181',
'end' => '86199720',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01082-001'
),
'ENST00000599411' => array(
'start' => '85981750',
'end' => '85984723',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-542M13.2-001'
),
'ENST00000595705' => array(
'start' => '86347387',
'end' => '86349611',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-158I3.3-001'
),
'ENST00000602425' => array(
'start' => '86221423',
'end' => '86222729',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-514D23.3-001'
),
'ENST00000614651' => array(
'start' => '85918347',
'end' => '85918416',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR6774-201'
),
'ENST00000613490' => array(
'start' => '86278538',
'end' => '86278605',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC040170.1-201'
),
'ENST00000616245' => array(
'start' => '86510780',
'end' => '86510877',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC009108.2-201'
),
'ENST00000624955' => array(
'start' => '86035627',
'end' => '86036419',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-542M13.1-001'
),
'ENSMUST00000047737' => array(
'start' => '120736358',
'end' => '120756694',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Irf8-001'
),
'ENSMUST00000160388' => array(
'start' => '120745480',
'end' => '120753733',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Irf8-006'
),
'ENSMUST00000160594' => array(
'start' => '120752209',
'end' => '120753711',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Irf8-007'
),
'ENSMUST00000160943' => array(
'start' => '120739990',
'end' => '120755204',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Irf8-004'
),
'ENSMUST00000162001' => array(
'start' => '120738639',
'end' => '120755581',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Irf8-003'
),
'ENSMUST00000162658' => array(
'start' => '120736385',
'end' => '120753478',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Irf8-005'
),
'ENSMUST00000162775' => array(
'start' => '120736359',
'end' => '120743234',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Irf8-002'
),
'ENSMUST00000181504' => array(
'start' => '121084386',
'end' => '121088144',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxf1-001'
),
'ENSMUST00000181778' => array(
'start' => '120880206',
'end' => '120882481',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26878-001'
),
'ENSMUST00000181231' => array(
'start' => '121058803',
'end' => '121060413',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Fendrr-002'
),
'ENSMUST00000181530' => array(
'start' => '121054882',
'end' => '121083032',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Fendrr-001'
),
'ENSMUST00000182264' => array(
'start' => '121059119',
'end' => '121083110',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Fendrr-003'
),
'ENSMUST00000184096' => array(
'start' => '121084609',
'end' => '121084706',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm27530-201'
),
'ENSMUST00000187913' => array(
'start' => '121002927',
'end' => '121003190',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-80D9.2-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0000YG_0001' => array(
'genes_in_region' => array(
'ENSDARG00000015399' => array(
[maximum depth reached]
),
'ENSDARG00000056407' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Muscle'
)
),
'CIL_0000YG_0002' => array(
'genes_in_region' => array(
'ENSG00000103241' => array(
[maximum depth reached]
),
'ENSG00000140968' => array(
[maximum depth reached]
),
'ENSG00000168367' => array(
[maximum depth reached]
),
'ENSG00000261177' => array(
[maximum depth reached]
),
'ENSG00000268078' => array(
[maximum depth reached]
),
'ENSG00000268388' => array(
[maximum depth reached]
),
'ENSG00000268505' => array(
[maximum depth reached]
),
'ENSG00000268532' => array(
[maximum depth reached]
),
'ENSG00000268754' => array(
[maximum depth reached]
),
'ENSG00000268804' => array(
[maximum depth reached]
),
'ENSG00000269186' => array(
[maximum depth reached]
),
'ENSG00000269667' => array(
[maximum depth reached]
),
'ENSG00000269826' => array(
[maximum depth reached]
),
'ENSG00000270058' => array(
[maximum depth reached]
),
'ENSG00000274134' => array(
[maximum depth reached]
),
'ENSG00000279604' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Muscle',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Liver',
(int) 29 => 'Muscle',
(int) 30 => 'Breast',
(int) 31 => 'Colon',
(int) 32 => 'Heart',
(int) 33 => 'Kidney',
(int) 34 => 'Lung',
(int) 35 => 'Adipose',
(int) 36 => 'Brain',
(int) 37 => 'Heart',
(int) 38 => 'Kidney',
(int) 39 => 'Breast',
(int) 40 => 'Colon',
(int) 41 => 'Ovary',
(int) 42 => 'Placenta',
(int) 43 => 'Testis',
(int) 44 => 'Ovary',
(int) 45 => 'Testis',
(int) 46 => 'Adipose',
(int) 47 => 'Bladder',
(int) 48 => 'Breast',
(int) 49 => 'Heart',
(int) 50 => 'Kidney',
(int) 51 => 'Ovary',
(int) 52 => 'Placenta',
(int) 53 => 'Testis',
(int) 54 => 'Bladder',
(int) 55 => 'Liver',
(int) 56 => 'Testis',
(int) 57 => 'Testis',
(int) 58 => 'Testis',
(int) 59 => 'Adipose',
(int) 60 => 'Adrenal',
(int) 61 => 'Brain',
(int) 62 => 'Breast',
(int) 63 => 'Colon',
(int) 64 => 'Heart',
(int) 65 => 'Kidney',
(int) 66 => 'Liver',
(int) 67 => 'Lung',
(int) 68 => 'Muscle',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Testis',
(int) 72 => 'Colon',
(int) 73 => 'Lung',
(int) 74 => 'Ovary',
(int) 75 => 'Placenta',
(int) 76 => 'Testis',
(int) 77 => 'Breast',
(int) 78 => 'Kidney',
(int) 79 => 'Placenta',
(int) 80 => 'Testis',
(int) 81 => 'Testis',
(int) 82 => 'Adipose',
(int) 83 => 'Adrenal',
(int) 84 => 'Brain',
(int) 85 => 'Breast',
(int) 86 => 'Colon',
(int) 87 => 'Heart',
(int) 88 => 'Kidney',
(int) 89 => 'Liver',
(int) 90 => 'Lung',
(int) 91 => 'Ovary',
(int) 92 => 'Placenta',
(int) 93 => 'Testis',
(int) 94 => 'Adrenal',
(int) 95 => 'Bladder',
(int) 96 => 'Brain',
(int) 97 => 'Breast',
(int) 98 => 'Colon',
(int) 99 => 'Heart',
(int) 100 => 'Kidney',
(int) 101 => 'Liver',
(int) 102 => 'Lung',
(int) 103 => 'Ovary',
(int) 104 => 'Placenta',
(int) 105 => 'Liver',
(int) 106 => 'Lung',
(int) 107 => 'Placenta',
(int) 108 => 'Testis',
(int) 109 => 'Adipose',
(int) 110 => 'Adrenal',
(int) 111 => 'Brain',
(int) 112 => 'Breast',
(int) 113 => 'Colon',
(int) 114 => 'Kidney',
(int) 115 => 'Liver',
(int) 116 => 'Lung',
(int) 117 => 'Ovary',
(int) 118 => 'Placenta',
(int) 119 => 'Testis',
(int) 120 => 'Ovary',
(int) 121 => 'Testis',
(int) 122 => 'Bladder',
(int) 123 => 'Colon',
(int) 124 => 'Lung',
(int) 125 => 'Placenta',
(int) 126 => 'Testis',
(int) 127 => 'Adipose',
(int) 128 => 'Adrenal',
(int) 129 => 'Breast',
(int) 130 => 'Colon',
(int) 131 => 'Kidney',
(int) 132 => 'Ovary',
(int) 133 => 'Placenta',
(int) 134 => 'Testis',
(int) 135 => 'Breast',
(int) 136 => 'Colon',
(int) 137 => 'Liver',
(int) 138 => 'Lung',
(int) 139 => 'Ovary',
(int) 140 => 'Placenta',
(int) 141 => 'Testis',
(int) 142 => 'Adipose',
(int) 143 => 'Adrenal',
(int) 144 => 'Brain',
(int) 145 => 'Breast',
(int) 146 => 'Colon',
(int) 147 => 'Heart',
(int) 148 => 'Kidney',
(int) 149 => 'Liver',
(int) 150 => 'Lung',
(int) 151 => 'Muscle',
(int) 152 => 'Ovary',
(int) 153 => 'Testis',
(int) 154 => 'Adipose',
(int) 155 => 'Adrenal',
(int) 156 => 'Brain',
(int) 157 => 'Colon',
(int) 158 => 'Lung',
(int) 159 => 'Ovary',
(int) 160 => 'Placenta',
(int) 161 => 'Testis',
(int) 162 => 'Adipose',
(int) 163 => 'Adrenal',
(int) 164 => 'Brain',
(int) 165 => 'Colon',
(int) 166 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0000YG_0003',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '120736358',
'seq_end' => '121088144',
'region_length' => '351786',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000041515-ENSMUSG00000042812'
)
)
$gene_el = array(
'ENST00000624955' => array(
'Adrenal' => array(
'average_FPKM' => '0.050',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.056',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.213',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.023',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSG00000279604'
$is_first = false
$tran_el = array(
'Adrenal' => array(
'average_FPKM' => '0.050',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.056',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.213',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.023',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENST00000624955'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0000YG_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000YG_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSDARG00000015399' => 'forkhead box F1',
'ENSDARG00000056407' => 'interferon regulatory factor 8',
'ENSG00000103241' => 'forkhead box F1',
'ENSG00000140968' => 'interferon regulatory factor 8',
'ENSG00000168367' => 'long intergenic non-protein coding RNA 917',
'ENSG00000199949' => 'Y RNA',
'ENSG00000261177' => null,
'ENSG00000268078' => null,
'ENSG00000268388' => 'FOXF1 adjacent non-coding developmental regulatory RNA',
'ENSG00000268473' => null,
'ENSG00000268505' => null,
'ENSG00000268532' => null,
'ENSG00000268754' => 'long intergenic non-protein coding RNA 1081',
'ENSG00000268804' => null,
'ENSG00000269186' => 'long intergenic non-protein coding RNA 1082',
'ENSG00000269667' => null,
'ENSG00000269826' => null,
'ENSG00000270058' => null,
'ENSG00000274134' => 'microRNA 6774',
'ENSG00000275388' => null,
'ENSG00000277360' => null,
'ENSG00000279604' => null,
'ENSMUSG00000041515' => 'interferon regulatory factor 8',
'ENSMUSG00000042812' => 'forkhead box F1',
'ENSMUSG00000097087' => 'predicted gene, 26878',
'ENSMUSG00000097336' => 'Foxf1 adjacent non-coding developmental regulatory RNA',
'ENSMUSG00000098560' => 'predicted gene, 27530',
'ENSMUSG00000101886' => 'predicted gene 28324'
),
'gene_name_arr' => array(
'ENSDARG00000015399' => 'foxf1',
'ENSDARG00000056407' => 'irf8',
'ENSG00000103241' => 'FOXF1',
'ENSG00000140968' => 'IRF8',
'ENSG00000168367' => 'LINC00917',
'ENSG00000199949' => 'Y_RNA',
'ENSG00000261177' => 'RP11-805I24.1',
'ENSG00000268078' => 'RP11-805I24.4',
'ENSG00000268388' => 'FENDRR',
'ENSG00000268473' => 'RP11-158I3.1',
'ENSG00000268505' => 'RP11-805I24.3',
'ENSG00000268532' => 'RP11-514D23.1',
'ENSG00000268754' => 'LINC01081',
'ENSG00000268804' => 'RP11-542M13.3',
'ENSG00000269186' => 'LINC01082',
'ENSG00000269667' => 'RP11-542M13.2',
'ENSG00000269826' => 'RP11-158I3.3',
'ENSG00000270058' => 'RP11-514D23.3',
'ENSG00000274134' => 'MIR6774',
'ENSG00000275388' => 'AC040170.1',
'ENSG00000277360' => 'AC009108.2',
'ENSG00000279604' => 'RP11-542M13.1',
'ENSMUSG00000041515' => 'Irf8',
'ENSMUSG00000042812' => 'Foxf1',
'ENSMUSG00000097087' => 'Gm26878',
'ENSMUSG00000097336' => 'Fendrr',
'ENSMUSG00000098560' => 'Gm27530',
'ENSMUSG00000101886' => 'RP23-80D9.2'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 21 => 'Bladder',
(int) 27 => 'Brain',
(int) 39 => 'Breast',
(int) 52 => 'Colon',
(int) 67 => 'Heart',
(int) 78 => 'Kidney',
(int) 92 => 'Liver',
(int) 105 => 'Lung',
(int) 118 => 'Muscle',
(int) 125 => 'Ovary',
(int) 140 => 'Placenta',
(int) 155 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 58,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENSDART00000012374' => array(
'start' => '30791440',
'end' => '30794568',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'foxf1-001'
),
'ENSDART00000078894' => array(
'start' => '30512223',
'end' => '30518127',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'irf8-001'
),
'ENST00000262426' => array(
'start' => '86510527',
'end' => '86515418',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXF1-001'
),
'ENST00000268638' => array(
'start' => '85898803',
'end' => '85922609',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-001'
),
'ENST00000562492' => array(
'start' => '85914043',
'end' => '85921371',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-009'
),
'ENST00000563180' => array(
'start' => '85902689',
'end' => '85909882',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-002'
),
'ENST00000564056' => array(
'start' => '85903131',
'end' => '85913312',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'IRF8-007'
),
'ENST00000564617' => array(
'start' => '85902815',
'end' => '85913160',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-011'
),
'ENST00000564803' => array(
'start' => '85902838',
'end' => '85918800',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-006'
),
'ENST00000565552' => array(
'start' => '85899163',
'end' => '85903156',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-004'
),
'ENST00000566369' => array(
'start' => '85908988',
'end' => '85922296',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-003'
),
'ENST00000569145' => array(
'start' => '85913974',
'end' => '85918489',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-008'
),
'ENST00000569607' => array(
'start' => '85914313',
'end' => '85921274',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-010'
),
'ENST00000570088' => array(
'start' => '85899188',
'end' => '85903531',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'IRF8-005'
),
'ENST00000594203' => array(
'start' => '86331844',
'end' => '86345644',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-002'
),
'ENST00000595169' => array(
'start' => '86337995',
'end' => '86349639',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-004'
),
'ENST00000598994' => array(
'start' => '86338450',
'end' => '86349680',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-007'
),
'ENST00000599619' => array(
'start' => '86338134',
'end' => '86349683',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-005'
),
'ENST00000599664' => array(
'start' => '86338249',
'end' => '86349683',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-006'
),
'ENST00000600892' => array(
'start' => '86331844',
'end' => '86337556',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-003'
),
'ENST00000601556' => array(
'start' => '86331850',
'end' => '86345679',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-001'
),
'ENST00000363079' => array(
'start' => '86275429',
'end' => '86275523',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Y_RNA.1-295'
),
'ENST00000563931' => array(
'start' => '86081409',
'end' => '86089526',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-805I24.1-001'
),
'ENST00000600234' => array(
'start' => '86158206',
'end' => '86158798',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-805I24.4-001'
),
'ENST00000593604' => array(
'start' => '86490268',
'end' => '86508877',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-007'
),
'ENST00000594398' => array(
'start' => '86490226',
'end' => '86498585',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-004'
),
'ENST00000595886' => array(
'start' => '86474529',
'end' => '86508860',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-003'
),
'ENST00000597578' => array(
'start' => '86490183',
'end' => '86508876',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-006'
),
'ENST00000598996' => array(
'start' => '86487706',
'end' => '86490879',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-002'
),
'ENST00000599749' => array(
'start' => '86487737',
'end' => '86509099',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-001'
),
'ENST00000600553' => array(
'start' => '86477124',
'end' => '86490881',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-005'
),
'ENST00000596612' => array(
'start' => '86434830',
'end' => '86435884',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-158I3.1-001'
),
'ENST00000599841' => array(
'start' => '86192793',
'end' => '86198913',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-805I24.3-001'
),
'ENST00000599486' => array(
'start' => '86286427',
'end' => '86293389',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-514D23.1-001'
),
'ENST00000597373' => array(
'start' => '86225580',
'end' => '86275745',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01081-001'
),
'ENST00000598933' => array(
'start' => '85935281',
'end' => '85936223',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-542M13.3-001'
),
'ENST00000601250' => array(
'start' => '86196181',
'end' => '86199720',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01082-001'
),
'ENST00000599411' => array(
'start' => '85981750',
'end' => '85984723',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-542M13.2-001'
),
'ENST00000595705' => array(
'start' => '86347387',
'end' => '86349611',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-158I3.3-001'
),
'ENST00000602425' => array(
'start' => '86221423',
'end' => '86222729',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-514D23.3-001'
),
'ENST00000614651' => array(
'start' => '85918347',
'end' => '85918416',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR6774-201'
),
'ENST00000613490' => array(
'start' => '86278538',
'end' => '86278605',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC040170.1-201'
),
'ENST00000616245' => array(
'start' => '86510780',
'end' => '86510877',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC009108.2-201'
),
'ENST00000624955' => array(
'start' => '86035627',
'end' => '86036419',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-542M13.1-001'
),
'ENSMUST00000047737' => array(
'start' => '120736358',
'end' => '120756694',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Irf8-001'
),
'ENSMUST00000160388' => array(
'start' => '120745480',
'end' => '120753733',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Irf8-006'
),
'ENSMUST00000160594' => array(
'start' => '120752209',
'end' => '120753711',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Irf8-007'
),
'ENSMUST00000160943' => array(
'start' => '120739990',
'end' => '120755204',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Irf8-004'
),
'ENSMUST00000162001' => array(
'start' => '120738639',
'end' => '120755581',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Irf8-003'
),
'ENSMUST00000162658' => array(
'start' => '120736385',
'end' => '120753478',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Irf8-005'
),
'ENSMUST00000162775' => array(
'start' => '120736359',
'end' => '120743234',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Irf8-002'
),
'ENSMUST00000181504' => array(
'start' => '121084386',
'end' => '121088144',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxf1-001'
),
'ENSMUST00000181778' => array(
'start' => '120880206',
'end' => '120882481',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26878-001'
),
'ENSMUST00000181231' => array(
'start' => '121058803',
'end' => '121060413',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Fendrr-002'
),
'ENSMUST00000181530' => array(
'start' => '121054882',
'end' => '121083032',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Fendrr-001'
),
'ENSMUST00000182264' => array(
'start' => '121059119',
'end' => '121083110',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Fendrr-003'
),
'ENSMUST00000184096' => array(
'start' => '121084609',
'end' => '121084706',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm27530-201'
),
'ENSMUST00000187913' => array(
'start' => '121002927',
'end' => '121003190',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-80D9.2-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0000YG_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0000YG_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0000YG_0001' => array(
'genes_in_region' => array(
'ENSDARG00000015399' => array(
[maximum depth reached]
),
'ENSDARG00000056407' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Muscle'
)
),
'CIL_0000YG_0002' => array(
'genes_in_region' => array(
'ENSG00000103241' => array(
[maximum depth reached]
),
'ENSG00000140968' => array(
[maximum depth reached]
),
'ENSG00000168367' => array(
[maximum depth reached]
),
'ENSG00000261177' => array(
[maximum depth reached]
),
'ENSG00000268078' => array(
[maximum depth reached]
),
'ENSG00000268388' => array(
[maximum depth reached]
),
'ENSG00000268505' => array(
[maximum depth reached]
),
'ENSG00000268532' => array(
[maximum depth reached]
),
'ENSG00000268754' => array(
[maximum depth reached]
),
'ENSG00000268804' => array(
[maximum depth reached]
),
'ENSG00000269186' => array(
[maximum depth reached]
),
'ENSG00000269667' => array(
[maximum depth reached]
),
'ENSG00000269826' => array(
[maximum depth reached]
),
'ENSG00000270058' => array(
[maximum depth reached]
),
'ENSG00000274134' => array(
[maximum depth reached]
),
'ENSG00000279604' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Muscle',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Liver',
(int) 29 => 'Muscle',
(int) 30 => 'Breast',
(int) 31 => 'Colon',
(int) 32 => 'Heart',
(int) 33 => 'Kidney',
(int) 34 => 'Lung',
(int) 35 => 'Adipose',
(int) 36 => 'Brain',
(int) 37 => 'Heart',
(int) 38 => 'Kidney',
(int) 39 => 'Breast',
(int) 40 => 'Colon',
(int) 41 => 'Ovary',
(int) 42 => 'Placenta',
(int) 43 => 'Testis',
(int) 44 => 'Ovary',
(int) 45 => 'Testis',
(int) 46 => 'Adipose',
(int) 47 => 'Bladder',
(int) 48 => 'Breast',
(int) 49 => 'Heart',
(int) 50 => 'Kidney',
(int) 51 => 'Ovary',
(int) 52 => 'Placenta',
(int) 53 => 'Testis',
(int) 54 => 'Bladder',
(int) 55 => 'Liver',
(int) 56 => 'Testis',
(int) 57 => 'Testis',
(int) 58 => 'Testis',
(int) 59 => 'Adipose',
(int) 60 => 'Adrenal',
(int) 61 => 'Brain',
(int) 62 => 'Breast',
(int) 63 => 'Colon',
(int) 64 => 'Heart',
(int) 65 => 'Kidney',
(int) 66 => 'Liver',
(int) 67 => 'Lung',
(int) 68 => 'Muscle',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Testis',
(int) 72 => 'Colon',
(int) 73 => 'Lung',
(int) 74 => 'Ovary',
(int) 75 => 'Placenta',
(int) 76 => 'Testis',
(int) 77 => 'Breast',
(int) 78 => 'Kidney',
(int) 79 => 'Placenta',
(int) 80 => 'Testis',
(int) 81 => 'Testis',
(int) 82 => 'Adipose',
(int) 83 => 'Adrenal',
(int) 84 => 'Brain',
(int) 85 => 'Breast',
(int) 86 => 'Colon',
(int) 87 => 'Heart',
(int) 88 => 'Kidney',
(int) 89 => 'Liver',
(int) 90 => 'Lung',
(int) 91 => 'Ovary',
(int) 92 => 'Placenta',
(int) 93 => 'Testis',
(int) 94 => 'Adrenal',
(int) 95 => 'Bladder',
(int) 96 => 'Brain',
(int) 97 => 'Breast',
(int) 98 => 'Colon',
(int) 99 => 'Heart',
(int) 100 => 'Kidney',
(int) 101 => 'Liver',
(int) 102 => 'Lung',
(int) 103 => 'Ovary',
(int) 104 => 'Placenta',
(int) 105 => 'Liver',
(int) 106 => 'Lung',
(int) 107 => 'Placenta',
(int) 108 => 'Testis',
(int) 109 => 'Adipose',
(int) 110 => 'Adrenal',
(int) 111 => 'Brain',
(int) 112 => 'Breast',
(int) 113 => 'Colon',
(int) 114 => 'Kidney',
(int) 115 => 'Liver',
(int) 116 => 'Lung',
(int) 117 => 'Ovary',
(int) 118 => 'Placenta',
(int) 119 => 'Testis',
(int) 120 => 'Ovary',
(int) 121 => 'Testis',
(int) 122 => 'Bladder',
(int) 123 => 'Colon',
(int) 124 => 'Lung',
(int) 125 => 'Placenta',
(int) 126 => 'Testis',
(int) 127 => 'Adipose',
(int) 128 => 'Adrenal',
(int) 129 => 'Breast',
(int) 130 => 'Colon',
(int) 131 => 'Kidney',
(int) 132 => 'Ovary',
(int) 133 => 'Placenta',
(int) 134 => 'Testis',
(int) 135 => 'Breast',
(int) 136 => 'Colon',
(int) 137 => 'Liver',
(int) 138 => 'Lung',
(int) 139 => 'Ovary',
(int) 140 => 'Placenta',
(int) 141 => 'Testis',
(int) 142 => 'Adipose',
(int) 143 => 'Adrenal',
(int) 144 => 'Brain',
(int) 145 => 'Breast',
(int) 146 => 'Colon',
(int) 147 => 'Heart',
(int) 148 => 'Kidney',
(int) 149 => 'Liver',
(int) 150 => 'Lung',
(int) 151 => 'Muscle',
(int) 152 => 'Ovary',
(int) 153 => 'Testis',
(int) 154 => 'Adipose',
(int) 155 => 'Adrenal',
(int) 156 => 'Brain',
(int) 157 => 'Colon',
(int) 158 => 'Lung',
(int) 159 => 'Ovary',
(int) 160 => 'Placenta',
(int) 161 => 'Testis',
(int) 162 => 'Adipose',
(int) 163 => 'Adrenal',
(int) 164 => 'Brain',
(int) 165 => 'Colon',
(int) 166 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSDARG00000015399' => 'forkhead box F1',
'ENSDARG00000056407' => 'interferon regulatory factor 8',
'ENSG00000103241' => 'forkhead box F1',
'ENSG00000140968' => 'interferon regulatory factor 8',
'ENSG00000168367' => 'long intergenic non-protein coding RNA 917',
'ENSG00000199949' => 'Y RNA',
'ENSG00000261177' => null,
'ENSG00000268078' => null,
'ENSG00000268388' => 'FOXF1 adjacent non-coding developmental regulatory RNA',
'ENSG00000268473' => null,
'ENSG00000268505' => null,
'ENSG00000268532' => null,
'ENSG00000268754' => 'long intergenic non-protein coding RNA 1081',
'ENSG00000268804' => null,
'ENSG00000269186' => 'long intergenic non-protein coding RNA 1082',
'ENSG00000269667' => null,
'ENSG00000269826' => null,
'ENSG00000270058' => null,
'ENSG00000274134' => 'microRNA 6774',
'ENSG00000275388' => null,
'ENSG00000277360' => null,
'ENSG00000279604' => null,
'ENSMUSG00000041515' => 'interferon regulatory factor 8',
'ENSMUSG00000042812' => 'forkhead box F1',
'ENSMUSG00000097087' => 'predicted gene, 26878',
'ENSMUSG00000097336' => 'Foxf1 adjacent non-coding developmental regulatory RNA',
'ENSMUSG00000098560' => 'predicted gene, 27530',
'ENSMUSG00000101886' => 'predicted gene 28324'
)
$gene_name_arr = array(
'ENSDARG00000015399' => 'foxf1',
'ENSDARG00000056407' => 'irf8',
'ENSG00000103241' => 'FOXF1',
'ENSG00000140968' => 'IRF8',
'ENSG00000168367' => 'LINC00917',
'ENSG00000199949' => 'Y_RNA',
'ENSG00000261177' => 'RP11-805I24.1',
'ENSG00000268078' => 'RP11-805I24.4',
'ENSG00000268388' => 'FENDRR',
'ENSG00000268473' => 'RP11-158I3.1',
'ENSG00000268505' => 'RP11-805I24.3',
'ENSG00000268532' => 'RP11-514D23.1',
'ENSG00000268754' => 'LINC01081',
'ENSG00000268804' => 'RP11-542M13.3',
'ENSG00000269186' => 'LINC01082',
'ENSG00000269667' => 'RP11-542M13.2',
'ENSG00000269826' => 'RP11-158I3.3',
'ENSG00000270058' => 'RP11-514D23.3',
'ENSG00000274134' => 'MIR6774',
'ENSG00000275388' => 'AC040170.1',
'ENSG00000277360' => 'AC009108.2',
'ENSG00000279604' => 'RP11-542M13.1',
'ENSMUSG00000041515' => 'Irf8',
'ENSMUSG00000042812' => 'Foxf1',
'ENSMUSG00000097087' => 'Gm26878',
'ENSMUSG00000097336' => 'Fendrr',
'ENSMUSG00000098560' => 'Gm27530',
'ENSMUSG00000101886' => 'RP23-80D9.2'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000YG_0001',
'tax_id' => '7955',
'chromosome' => '18',
'seq_start' => '30512223',
'seq_end' => '30794568',
'region_length' => '282345',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000056407-ENSDARG00000015399'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000YG_0002',
'tax_id' => '9606',
'chromosome' => '16',
'seq_start' => '85898803',
'seq_end' => '86515418',
'region_length' => '616615',
'region_type' => 'CGP',
'el_id' => 'ENSG00000140968-ENSG00000103241'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0000YG_0003',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '120736358',
'seq_end' => '121088144',
'region_length' => '351786',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000041515-ENSMUSG00000042812'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 21 => 'Bladder',
(int) 27 => 'Brain',
(int) 39 => 'Breast',
(int) 52 => 'Colon',
(int) 67 => 'Heart',
(int) 78 => 'Kidney',
(int) 92 => 'Liver',
(int) 105 => 'Lung',
(int) 118 => 'Muscle',
(int) 125 => 'Ovary',
(int) 140 => 'Placenta',
(int) 155 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 58
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENSDART00000012374' => array(
'start' => '30791440',
'end' => '30794568',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'foxf1-001'
),
'ENSDART00000078894' => array(
'start' => '30512223',
'end' => '30518127',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'irf8-001'
),
'ENST00000262426' => array(
'start' => '86510527',
'end' => '86515418',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FOXF1-001'
),
'ENST00000268638' => array(
'start' => '85898803',
'end' => '85922609',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-001'
),
'ENST00000562492' => array(
'start' => '85914043',
'end' => '85921371',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-009'
),
'ENST00000563180' => array(
'start' => '85902689',
'end' => '85909882',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-002'
),
'ENST00000564056' => array(
'start' => '85903131',
'end' => '85913312',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'IRF8-007'
),
'ENST00000564617' => array(
'start' => '85902815',
'end' => '85913160',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-011'
),
'ENST00000564803' => array(
'start' => '85902838',
'end' => '85918800',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-006'
),
'ENST00000565552' => array(
'start' => '85899163',
'end' => '85903156',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-004'
),
'ENST00000566369' => array(
'start' => '85908988',
'end' => '85922296',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-003'
),
'ENST00000569145' => array(
'start' => '85913974',
'end' => '85918489',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-008'
),
'ENST00000569607' => array(
'start' => '85914313',
'end' => '85921274',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'IRF8-010'
),
'ENST00000570088' => array(
'start' => '85899188',
'end' => '85903531',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'IRF8-005'
),
'ENST00000594203' => array(
'start' => '86331844',
'end' => '86345644',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-002'
),
'ENST00000595169' => array(
'start' => '86337995',
'end' => '86349639',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-004'
),
'ENST00000598994' => array(
'start' => '86338450',
'end' => '86349680',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-007'
),
'ENST00000599619' => array(
'start' => '86338134',
'end' => '86349683',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-005'
),
'ENST00000599664' => array(
'start' => '86338249',
'end' => '86349683',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-006'
),
'ENST00000600892' => array(
'start' => '86331844',
'end' => '86337556',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-003'
),
'ENST00000601556' => array(
'start' => '86331850',
'end' => '86345679',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00917-001'
),
'ENST00000363079' => array(
'start' => '86275429',
'end' => '86275523',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Y_RNA.1-295'
),
'ENST00000563931' => array(
'start' => '86081409',
'end' => '86089526',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-805I24.1-001'
),
'ENST00000600234' => array(
'start' => '86158206',
'end' => '86158798',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-805I24.4-001'
),
'ENST00000593604' => array(
'start' => '86490268',
'end' => '86508877',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-007'
),
'ENST00000594398' => array(
'start' => '86490226',
'end' => '86498585',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-004'
),
'ENST00000595886' => array(
'start' => '86474529',
'end' => '86508860',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-003'
),
'ENST00000597578' => array(
'start' => '86490183',
'end' => '86508876',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-006'
),
'ENST00000598996' => array(
'start' => '86487706',
'end' => '86490879',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-002'
),
'ENST00000599749' => array(
'start' => '86487737',
'end' => '86509099',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-001'
),
'ENST00000600553' => array(
'start' => '86477124',
'end' => '86490881',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'FENDRR-005'
),
'ENST00000596612' => array(
'start' => '86434830',
'end' => '86435884',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-158I3.1-001'
),
'ENST00000599841' => array(
'start' => '86192793',
'end' => '86198913',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-805I24.3-001'
),
'ENST00000599486' => array(
'start' => '86286427',
'end' => '86293389',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-514D23.1-001'
),
'ENST00000597373' => array(
'start' => '86225580',
'end' => '86275745',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01081-001'
),
'ENST00000598933' => array(
'start' => '85935281',
'end' => '85936223',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-542M13.3-001'
),
'ENST00000601250' => array(
'start' => '86196181',
'end' => '86199720',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01082-001'
),
'ENST00000599411' => array(
'start' => '85981750',
'end' => '85984723',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-542M13.2-001'
),
'ENST00000595705' => array(
'start' => '86347387',
'end' => '86349611',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-158I3.3-001'
),
'ENST00000602425' => array(
'start' => '86221423',
'end' => '86222729',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-514D23.3-001'
),
'ENST00000614651' => array(
'start' => '85918347',
'end' => '85918416',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'MIR6774-201'
),
'ENST00000613490' => array(
'start' => '86278538',
'end' => '86278605',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC040170.1-201'
),
'ENST00000616245' => array(
'start' => '86510780',
'end' => '86510877',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'AC009108.2-201'
),
'ENST00000624955' => array(
'start' => '86035627',
'end' => '86036419',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-542M13.1-001'
),
'ENSMUST00000047737' => array(
'start' => '120736358',
'end' => '120756694',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Irf8-001'
),
'ENSMUST00000160388' => array(
'start' => '120745480',
'end' => '120753733',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Irf8-006'
),
'ENSMUST00000160594' => array(
'start' => '120752209',
'end' => '120753711',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Irf8-007'
),
'ENSMUST00000160943' => array(
'start' => '120739990',
'end' => '120755204',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Irf8-004'
),
'ENSMUST00000162001' => array(
'start' => '120738639',
'end' => '120755581',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Irf8-003'
),
'ENSMUST00000162658' => array(
'start' => '120736385',
'end' => '120753478',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Irf8-005'
),
'ENSMUST00000162775' => array(
'start' => '120736359',
'end' => '120743234',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Irf8-002'
),
'ENSMUST00000181504' => array(
'start' => '121084386',
'end' => '121088144',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Foxf1-001'
),
'ENSMUST00000181778' => array(
'start' => '120880206',
'end' => '120882481',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm26878-001'
),
'ENSMUST00000181231' => array(
'start' => '121058803',
'end' => '121060413',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Fendrr-002'
),
'ENSMUST00000181530' => array(
'start' => '121054882',
'end' => '121083032',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Fendrr-001'
),
'ENSMUST00000182264' => array(
'start' => '121059119',
'end' => '121083110',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Fendrr-003'
),
'ENSMUST00000184096' => array(
'start' => '121084609',
'end' => '121084706',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm27530-201'
),
'ENSMUST00000187913' => array(
'start' => '121002927',
'end' => '121003190',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-80D9.2-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0000YG_0001' => array(
'genes_in_region' => array(
'ENSDARG00000015399' => array(
[maximum depth reached]
),
'ENSDARG00000056407' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Muscle'
)
),
'CIL_0000YG_0002' => array(
'genes_in_region' => array(
'ENSG00000103241' => array(
[maximum depth reached]
),
'ENSG00000140968' => array(
[maximum depth reached]
),
'ENSG00000168367' => array(
[maximum depth reached]
),
'ENSG00000261177' => array(
[maximum depth reached]
),
'ENSG00000268078' => array(
[maximum depth reached]
),
'ENSG00000268388' => array(
[maximum depth reached]
),
'ENSG00000268505' => array(
[maximum depth reached]
),
'ENSG00000268532' => array(
[maximum depth reached]
),
'ENSG00000268754' => array(
[maximum depth reached]
),
'ENSG00000268804' => array(
[maximum depth reached]
),
'ENSG00000269186' => array(
[maximum depth reached]
),
'ENSG00000269667' => array(
[maximum depth reached]
),
'ENSG00000269826' => array(
[maximum depth reached]
),
'ENSG00000270058' => array(
[maximum depth reached]
),
'ENSG00000274134' => array(
[maximum depth reached]
),
'ENSG00000279604' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Adipose',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Breast',
(int) 19 => 'Colon',
(int) 20 => 'Heart',
(int) 21 => 'Kidney',
(int) 22 => 'Liver',
(int) 23 => 'Lung',
(int) 24 => 'Muscle',
(int) 25 => 'Ovary',
(int) 26 => 'Placenta',
(int) 27 => 'Testis',
(int) 28 => 'Liver',
(int) 29 => 'Muscle',
(int) 30 => 'Breast',
(int) 31 => 'Colon',
(int) 32 => 'Heart',
(int) 33 => 'Kidney',
(int) 34 => 'Lung',
(int) 35 => 'Adipose',
(int) 36 => 'Brain',
(int) 37 => 'Heart',
(int) 38 => 'Kidney',
(int) 39 => 'Breast',
(int) 40 => 'Colon',
(int) 41 => 'Ovary',
(int) 42 => 'Placenta',
(int) 43 => 'Testis',
(int) 44 => 'Ovary',
(int) 45 => 'Testis',
(int) 46 => 'Adipose',
(int) 47 => 'Bladder',
(int) 48 => 'Breast',
(int) 49 => 'Heart',
(int) 50 => 'Kidney',
(int) 51 => 'Ovary',
(int) 52 => 'Placenta',
(int) 53 => 'Testis',
(int) 54 => 'Bladder',
(int) 55 => 'Liver',
(int) 56 => 'Testis',
(int) 57 => 'Testis',
(int) 58 => 'Testis',
(int) 59 => 'Adipose',
(int) 60 => 'Adrenal',
(int) 61 => 'Brain',
(int) 62 => 'Breast',
(int) 63 => 'Colon',
(int) 64 => 'Heart',
(int) 65 => 'Kidney',
(int) 66 => 'Liver',
(int) 67 => 'Lung',
(int) 68 => 'Muscle',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Testis',
(int) 72 => 'Colon',
(int) 73 => 'Lung',
(int) 74 => 'Ovary',
(int) 75 => 'Placenta',
(int) 76 => 'Testis',
(int) 77 => 'Breast',
(int) 78 => 'Kidney',
(int) 79 => 'Placenta',
(int) 80 => 'Testis',
(int) 81 => 'Testis',
(int) 82 => 'Adipose',
(int) 83 => 'Adrenal',
(int) 84 => 'Brain',
(int) 85 => 'Breast',
(int) 86 => 'Colon',
(int) 87 => 'Heart',
(int) 88 => 'Kidney',
(int) 89 => 'Liver',
(int) 90 => 'Lung',
(int) 91 => 'Ovary',
(int) 92 => 'Placenta',
(int) 93 => 'Testis',
(int) 94 => 'Adrenal',
(int) 95 => 'Bladder',
(int) 96 => 'Brain',
(int) 97 => 'Breast',
(int) 98 => 'Colon',
(int) 99 => 'Heart',
(int) 100 => 'Kidney',
(int) 101 => 'Liver',
(int) 102 => 'Lung',
(int) 103 => 'Ovary',
(int) 104 => 'Placenta',
(int) 105 => 'Liver',
(int) 106 => 'Lung',
(int) 107 => 'Placenta',
(int) 108 => 'Testis',
(int) 109 => 'Adipose',
(int) 110 => 'Adrenal',
(int) 111 => 'Brain',
(int) 112 => 'Breast',
(int) 113 => 'Colon',
(int) 114 => 'Kidney',
(int) 115 => 'Liver',
(int) 116 => 'Lung',
(int) 117 => 'Ovary',
(int) 118 => 'Placenta',
(int) 119 => 'Testis',
(int) 120 => 'Ovary',
(int) 121 => 'Testis',
(int) 122 => 'Bladder',
(int) 123 => 'Colon',
(int) 124 => 'Lung',
(int) 125 => 'Placenta',
(int) 126 => 'Testis',
(int) 127 => 'Adipose',
(int) 128 => 'Adrenal',
(int) 129 => 'Breast',
(int) 130 => 'Colon',
(int) 131 => 'Kidney',
(int) 132 => 'Ovary',
(int) 133 => 'Placenta',
(int) 134 => 'Testis',
(int) 135 => 'Breast',
(int) 136 => 'Colon',
(int) 137 => 'Liver',
(int) 138 => 'Lung',
(int) 139 => 'Ovary',
(int) 140 => 'Placenta',
(int) 141 => 'Testis',
(int) 142 => 'Adipose',
(int) 143 => 'Adrenal',
(int) 144 => 'Brain',
(int) 145 => 'Breast',
(int) 146 => 'Colon',
(int) 147 => 'Heart',
(int) 148 => 'Kidney',
(int) 149 => 'Liver',
(int) 150 => 'Lung',
(int) 151 => 'Muscle',
(int) 152 => 'Ovary',
(int) 153 => 'Testis',
(int) 154 => 'Adipose',
(int) 155 => 'Adrenal',
(int) 156 => 'Brain',
(int) 157 => 'Colon',
(int) 158 => 'Lung',
(int) 159 => 'Ovary',
(int) 160 => 'Placenta',
(int) 161 => 'Testis',
(int) 162 => 'Adipose',
(int) 163 => 'Adrenal',
(int) 164 => 'Brain',
(int) 165 => 'Colon',
(int) 166 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0000YG_0003',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '120736358',
'seq_end' => '121088144',
'region_length' => '351786',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000041515-ENSMUSG00000042812'
)
)
$gene_el = array(
'ENST00000624955' => array(
'Adrenal' => array(
'average_FPKM' => '0.050',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.056',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.213',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.023',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSG00000279604'
$is_first = false
$tran_el = array(
'Adrenal' => array(
'average_FPKM' => '0.050',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.056',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.213',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.023',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENST00000624955'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(foxf1)