Notice (8): Undefined index: CIL_0000YG_0003 [APP/View/Region/show.ctp, line 46]
Code Context

        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0000YG_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0000YG_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSDARG00000015399' => 'forkhead box F1',
		'ENSDARG00000056407' => 'interferon regulatory factor 8',
		'ENSG00000103241' => 'forkhead box F1',
		'ENSG00000140968' => 'interferon regulatory factor 8',
		'ENSG00000168367' => 'long intergenic non-protein coding RNA 917',
		'ENSG00000199949' => 'Y RNA',
		'ENSG00000261177' => null,
		'ENSG00000268078' => null,
		'ENSG00000268388' => 'FOXF1 adjacent non-coding developmental regulatory RNA',
		'ENSG00000268473' => null,
		'ENSG00000268505' => null,
		'ENSG00000268532' => null,
		'ENSG00000268754' => 'long intergenic non-protein coding RNA 1081',
		'ENSG00000268804' => null,
		'ENSG00000269186' => 'long intergenic non-protein coding RNA 1082',
		'ENSG00000269667' => null,
		'ENSG00000269826' => null,
		'ENSG00000270058' => null,
		'ENSG00000274134' => 'microRNA 6774',
		'ENSG00000275388' => null,
		'ENSG00000277360' => null,
		'ENSG00000279604' => null,
		'ENSMUSG00000041515' => 'interferon regulatory factor 8',
		'ENSMUSG00000042812' => 'forkhead box F1',
		'ENSMUSG00000097087' => 'predicted gene, 26878',
		'ENSMUSG00000097336' => 'Foxf1 adjacent non-coding developmental regulatory RNA',
		'ENSMUSG00000098560' => 'predicted gene, 27530',
		'ENSMUSG00000101886' => 'predicted gene 28324'
	),
	'gene_name_arr' => array(
		'ENSDARG00000015399' => 'foxf1',
		'ENSDARG00000056407' => 'irf8',
		'ENSG00000103241' => 'FOXF1',
		'ENSG00000140968' => 'IRF8',
		'ENSG00000168367' => 'LINC00917',
		'ENSG00000199949' => 'Y_RNA',
		'ENSG00000261177' => 'RP11-805I24.1',
		'ENSG00000268078' => 'RP11-805I24.4',
		'ENSG00000268388' => 'FENDRR',
		'ENSG00000268473' => 'RP11-158I3.1',
		'ENSG00000268505' => 'RP11-805I24.3',
		'ENSG00000268532' => 'RP11-514D23.1',
		'ENSG00000268754' => 'LINC01081',
		'ENSG00000268804' => 'RP11-542M13.3',
		'ENSG00000269186' => 'LINC01082',
		'ENSG00000269667' => 'RP11-542M13.2',
		'ENSG00000269826' => 'RP11-158I3.3',
		'ENSG00000270058' => 'RP11-514D23.3',
		'ENSG00000274134' => 'MIR6774',
		'ENSG00000275388' => 'AC040170.1',
		'ENSG00000277360' => 'AC009108.2',
		'ENSG00000279604' => 'RP11-542M13.1',
		'ENSMUSG00000041515' => 'Irf8',
		'ENSMUSG00000042812' => 'Foxf1',
		'ENSMUSG00000097087' => 'Gm26878',
		'ENSMUSG00000097336' => 'Fendrr',
		'ENSMUSG00000098560' => 'Gm27530',
		'ENSMUSG00000101886' => 'RP23-80D9.2'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 11 => 'Adrenal',
		(int) 21 => 'Bladder',
		(int) 27 => 'Brain',
		(int) 39 => 'Breast',
		(int) 52 => 'Colon',
		(int) 67 => 'Heart',
		(int) 78 => 'Kidney',
		(int) 92 => 'Liver',
		(int) 105 => 'Lung',
		(int) 118 => 'Muscle',
		(int) 125 => 'Ovary',
		(int) 140 => 'Placenta',
		(int) 155 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 58,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENSDART00000012374' => array(
			'start' => '30791440',
			'end' => '30794568',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'foxf1-001'
		),
		'ENSDART00000078894' => array(
			'start' => '30512223',
			'end' => '30518127',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'irf8-001'
		),
		'ENST00000262426' => array(
			'start' => '86510527',
			'end' => '86515418',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'FOXF1-001'
		),
		'ENST00000268638' => array(
			'start' => '85898803',
			'end' => '85922609',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'IRF8-001'
		),
		'ENST00000562492' => array(
			'start' => '85914043',
			'end' => '85921371',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'IRF8-009'
		),
		'ENST00000563180' => array(
			'start' => '85902689',
			'end' => '85909882',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'IRF8-002'
		),
		'ENST00000564056' => array(
			'start' => '85903131',
			'end' => '85913312',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'IRF8-007'
		),
		'ENST00000564617' => array(
			'start' => '85902815',
			'end' => '85913160',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'IRF8-011'
		),
		'ENST00000564803' => array(
			'start' => '85902838',
			'end' => '85918800',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'IRF8-006'
		),
		'ENST00000565552' => array(
			'start' => '85899163',
			'end' => '85903156',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'IRF8-004'
		),
		'ENST00000566369' => array(
			'start' => '85908988',
			'end' => '85922296',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'IRF8-003'
		),
		'ENST00000569145' => array(
			'start' => '85913974',
			'end' => '85918489',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'IRF8-008'
		),
		'ENST00000569607' => array(
			'start' => '85914313',
			'end' => '85921274',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'IRF8-010'
		),
		'ENST00000570088' => array(
			'start' => '85899188',
			'end' => '85903531',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'IRF8-005'
		),
		'ENST00000594203' => array(
			'start' => '86331844',
			'end' => '86345644',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00917-002'
		),
		'ENST00000595169' => array(
			'start' => '86337995',
			'end' => '86349639',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00917-004'
		),
		'ENST00000598994' => array(
			'start' => '86338450',
			'end' => '86349680',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00917-007'
		),
		'ENST00000599619' => array(
			'start' => '86338134',
			'end' => '86349683',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00917-005'
		),
		'ENST00000599664' => array(
			'start' => '86338249',
			'end' => '86349683',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00917-006'
		),
		'ENST00000600892' => array(
			'start' => '86331844',
			'end' => '86337556',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00917-003'
		),
		'ENST00000601556' => array(
			'start' => '86331850',
			'end' => '86345679',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00917-001'
		),
		'ENST00000363079' => array(
			'start' => '86275429',
			'end' => '86275523',
			'transcript_biotype' => 'misc_RNA',
			'transcript_name' => 'Y_RNA.1-295'
		),
		'ENST00000563931' => array(
			'start' => '86081409',
			'end' => '86089526',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-805I24.1-001'
		),
		'ENST00000600234' => array(
			'start' => '86158206',
			'end' => '86158798',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-805I24.4-001'
		),
		'ENST00000593604' => array(
			'start' => '86490268',
			'end' => '86508877',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'FENDRR-007'
		),
		'ENST00000594398' => array(
			'start' => '86490226',
			'end' => '86498585',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'FENDRR-004'
		),
		'ENST00000595886' => array(
			'start' => '86474529',
			'end' => '86508860',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'FENDRR-003'
		),
		'ENST00000597578' => array(
			'start' => '86490183',
			'end' => '86508876',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'FENDRR-006'
		),
		'ENST00000598996' => array(
			'start' => '86487706',
			'end' => '86490879',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'FENDRR-002'
		),
		'ENST00000599749' => array(
			'start' => '86487737',
			'end' => '86509099',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'FENDRR-001'
		),
		'ENST00000600553' => array(
			'start' => '86477124',
			'end' => '86490881',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'FENDRR-005'
		),
		'ENST00000596612' => array(
			'start' => '86434830',
			'end' => '86435884',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'RP11-158I3.1-001'
		),
		'ENST00000599841' => array(
			'start' => '86192793',
			'end' => '86198913',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-805I24.3-001'
		),
		'ENST00000599486' => array(
			'start' => '86286427',
			'end' => '86293389',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-514D23.1-001'
		),
		'ENST00000597373' => array(
			'start' => '86225580',
			'end' => '86275745',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01081-001'
		),
		'ENST00000598933' => array(
			'start' => '85935281',
			'end' => '85936223',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-542M13.3-001'
		),
		'ENST00000601250' => array(
			'start' => '86196181',
			'end' => '86199720',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01082-001'
		),
		'ENST00000599411' => array(
			'start' => '85981750',
			'end' => '85984723',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-542M13.2-001'
		),
		'ENST00000595705' => array(
			'start' => '86347387',
			'end' => '86349611',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-158I3.3-001'
		),
		'ENST00000602425' => array(
			'start' => '86221423',
			'end' => '86222729',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-514D23.3-001'
		),
		'ENST00000614651' => array(
			'start' => '85918347',
			'end' => '85918416',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'MIR6774-201'
		),
		'ENST00000613490' => array(
			'start' => '86278538',
			'end' => '86278605',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'AC040170.1-201'
		),
		'ENST00000616245' => array(
			'start' => '86510780',
			'end' => '86510877',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'AC009108.2-201'
		),
		'ENST00000624955' => array(
			'start' => '86035627',
			'end' => '86036419',
			'transcript_biotype' => 'TEC',
			'transcript_name' => 'RP11-542M13.1-001'
		),
		'ENSMUST00000047737' => array(
			'start' => '120736358',
			'end' => '120756694',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Irf8-001'
		),
		'ENSMUST00000160388' => array(
			'start' => '120745480',
			'end' => '120753733',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Irf8-006'
		),
		'ENSMUST00000160594' => array(
			'start' => '120752209',
			'end' => '120753711',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Irf8-007'
		),
		'ENSMUST00000160943' => array(
			'start' => '120739990',
			'end' => '120755204',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Irf8-004'
		),
		'ENSMUST00000162001' => array(
			'start' => '120738639',
			'end' => '120755581',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Irf8-003'
		),
		'ENSMUST00000162658' => array(
			'start' => '120736385',
			'end' => '120753478',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Irf8-005'
		),
		'ENSMUST00000162775' => array(
			'start' => '120736359',
			'end' => '120743234',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Irf8-002'
		),
		'ENSMUST00000181504' => array(
			'start' => '121084386',
			'end' => '121088144',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Foxf1-001'
		),
		'ENSMUST00000181778' => array(
			'start' => '120880206',
			'end' => '120882481',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'Gm26878-001'
		),
		'ENSMUST00000181231' => array(
			'start' => '121058803',
			'end' => '121060413',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'Fendrr-002'
		),
		'ENSMUST00000181530' => array(
			'start' => '121054882',
			'end' => '121083032',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'Fendrr-001'
		),
		'ENSMUST00000182264' => array(
			'start' => '121059119',
			'end' => '121083110',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'Fendrr-003'
		),
		'ENSMUST00000184096' => array(
			'start' => '121084609',
			'end' => '121084706',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'Gm27530-201'
		),
		'ENSMUST00000187913' => array(
			'start' => '121002927',
			'end' => '121003190',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP23-80D9.2-001'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0000YG_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0000YG_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0000YG_0001' => array(
		'genes_in_region' => array(
			'ENSDARG00000015399' => array(
				[maximum depth reached]
			),
			'ENSDARG00000056407' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney',
			(int) 3 => 'Liver',
			(int) 4 => 'Muscle',
			(int) 5 => 'Brain',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Liver',
			(int) 9 => 'Muscle'
		)
	),
	'CIL_0000YG_0002' => array(
		'genes_in_region' => array(
			'ENSG00000103241' => array(
				[maximum depth reached]
			),
			'ENSG00000140968' => array(
				[maximum depth reached]
			),
			'ENSG00000168367' => array(
				[maximum depth reached]
			),
			'ENSG00000261177' => array(
				[maximum depth reached]
			),
			'ENSG00000268078' => array(
				[maximum depth reached]
			),
			'ENSG00000268388' => array(
				[maximum depth reached]
			),
			'ENSG00000268505' => array(
				[maximum depth reached]
			),
			'ENSG00000268532' => array(
				[maximum depth reached]
			),
			'ENSG00000268754' => array(
				[maximum depth reached]
			),
			'ENSG00000268804' => array(
				[maximum depth reached]
			),
			'ENSG00000269186' => array(
				[maximum depth reached]
			),
			'ENSG00000269667' => array(
				[maximum depth reached]
			),
			'ENSG00000269826' => array(
				[maximum depth reached]
			),
			'ENSG00000270058' => array(
				[maximum depth reached]
			),
			'ENSG00000274134' => array(
				[maximum depth reached]
			),
			'ENSG00000279604' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Breast',
			(int) 5 => 'Colon',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Liver',
			(int) 9 => 'Lung',
			(int) 10 => 'Muscle',
			(int) 11 => 'Ovary',
			(int) 12 => 'Placenta',
			(int) 13 => 'Testis',
			(int) 14 => 'Adipose',
			(int) 15 => 'Adrenal',
			(int) 16 => 'Bladder',
			(int) 17 => 'Brain',
			(int) 18 => 'Breast',
			(int) 19 => 'Colon',
			(int) 20 => 'Heart',
			(int) 21 => 'Kidney',
			(int) 22 => 'Liver',
			(int) 23 => 'Lung',
			(int) 24 => 'Muscle',
			(int) 25 => 'Ovary',
			(int) 26 => 'Placenta',
			(int) 27 => 'Testis',
			(int) 28 => 'Liver',
			(int) 29 => 'Muscle',
			(int) 30 => 'Breast',
			(int) 31 => 'Colon',
			(int) 32 => 'Heart',
			(int) 33 => 'Kidney',
			(int) 34 => 'Lung',
			(int) 35 => 'Adipose',
			(int) 36 => 'Brain',
			(int) 37 => 'Heart',
			(int) 38 => 'Kidney',
			(int) 39 => 'Breast',
			(int) 40 => 'Colon',
			(int) 41 => 'Ovary',
			(int) 42 => 'Placenta',
			(int) 43 => 'Testis',
			(int) 44 => 'Ovary',
			(int) 45 => 'Testis',
			(int) 46 => 'Adipose',
			(int) 47 => 'Bladder',
			(int) 48 => 'Breast',
			(int) 49 => 'Heart',
			(int) 50 => 'Kidney',
			(int) 51 => 'Ovary',
			(int) 52 => 'Placenta',
			(int) 53 => 'Testis',
			(int) 54 => 'Bladder',
			(int) 55 => 'Liver',
			(int) 56 => 'Testis',
			(int) 57 => 'Testis',
			(int) 58 => 'Testis',
			(int) 59 => 'Adipose',
			(int) 60 => 'Adrenal',
			(int) 61 => 'Brain',
			(int) 62 => 'Breast',
			(int) 63 => 'Colon',
			(int) 64 => 'Heart',
			(int) 65 => 'Kidney',
			(int) 66 => 'Liver',
			(int) 67 => 'Lung',
			(int) 68 => 'Muscle',
			(int) 69 => 'Ovary',
			(int) 70 => 'Placenta',
			(int) 71 => 'Testis',
			(int) 72 => 'Colon',
			(int) 73 => 'Lung',
			(int) 74 => 'Ovary',
			(int) 75 => 'Placenta',
			(int) 76 => 'Testis',
			(int) 77 => 'Breast',
			(int) 78 => 'Kidney',
			(int) 79 => 'Placenta',
			(int) 80 => 'Testis',
			(int) 81 => 'Testis',
			(int) 82 => 'Adipose',
			(int) 83 => 'Adrenal',
			(int) 84 => 'Brain',
			(int) 85 => 'Breast',
			(int) 86 => 'Colon',
			(int) 87 => 'Heart',
			(int) 88 => 'Kidney',
			(int) 89 => 'Liver',
			(int) 90 => 'Lung',
			(int) 91 => 'Ovary',
			(int) 92 => 'Placenta',
			(int) 93 => 'Testis',
			(int) 94 => 'Adrenal',
			(int) 95 => 'Bladder',
			(int) 96 => 'Brain',
			(int) 97 => 'Breast',
			(int) 98 => 'Colon',
			(int) 99 => 'Heart',
			(int) 100 => 'Kidney',
			(int) 101 => 'Liver',
			(int) 102 => 'Lung',
			(int) 103 => 'Ovary',
			(int) 104 => 'Placenta',
			(int) 105 => 'Liver',
			(int) 106 => 'Lung',
			(int) 107 => 'Placenta',
			(int) 108 => 'Testis',
			(int) 109 => 'Adipose',
			(int) 110 => 'Adrenal',
			(int) 111 => 'Brain',
			(int) 112 => 'Breast',
			(int) 113 => 'Colon',
			(int) 114 => 'Kidney',
			(int) 115 => 'Liver',
			(int) 116 => 'Lung',
			(int) 117 => 'Ovary',
			(int) 118 => 'Placenta',
			(int) 119 => 'Testis',
			(int) 120 => 'Ovary',
			(int) 121 => 'Testis',
			(int) 122 => 'Bladder',
			(int) 123 => 'Colon',
			(int) 124 => 'Lung',
			(int) 125 => 'Placenta',
			(int) 126 => 'Testis',
			(int) 127 => 'Adipose',
			(int) 128 => 'Adrenal',
			(int) 129 => 'Breast',
			(int) 130 => 'Colon',
			(int) 131 => 'Kidney',
			(int) 132 => 'Ovary',
			(int) 133 => 'Placenta',
			(int) 134 => 'Testis',
			(int) 135 => 'Breast',
			(int) 136 => 'Colon',
			(int) 137 => 'Liver',
			(int) 138 => 'Lung',
			(int) 139 => 'Ovary',
			(int) 140 => 'Placenta',
			(int) 141 => 'Testis',
			(int) 142 => 'Adipose',
			(int) 143 => 'Adrenal',
			(int) 144 => 'Brain',
			(int) 145 => 'Breast',
			(int) 146 => 'Colon',
			(int) 147 => 'Heart',
			(int) 148 => 'Kidney',
			(int) 149 => 'Liver',
			(int) 150 => 'Lung',
			(int) 151 => 'Muscle',
			(int) 152 => 'Ovary',
			(int) 153 => 'Testis',
			(int) 154 => 'Adipose',
			(int) 155 => 'Adrenal',
			(int) 156 => 'Brain',
			(int) 157 => 'Colon',
			(int) 158 => 'Lung',
			(int) 159 => 'Ovary',
			(int) 160 => 'Placenta',
			(int) 161 => 'Testis',
			(int) 162 => 'Adipose',
			(int) 163 => 'Adrenal',
			(int) 164 => 'Brain',
			(int) 165 => 'Colon',
			(int) 166 => 'Testis'
		)
	)
)
$gene_desc_arr = array(
	'ENSDARG00000015399' => 'forkhead box F1',
	'ENSDARG00000056407' => 'interferon regulatory factor 8',
	'ENSG00000103241' => 'forkhead box F1',
	'ENSG00000140968' => 'interferon regulatory factor 8',
	'ENSG00000168367' => 'long intergenic non-protein coding RNA 917',
	'ENSG00000199949' => 'Y RNA',
	'ENSG00000261177' => null,
	'ENSG00000268078' => null,
	'ENSG00000268388' => 'FOXF1 adjacent non-coding developmental regulatory RNA',
	'ENSG00000268473' => null,
	'ENSG00000268505' => null,
	'ENSG00000268532' => null,
	'ENSG00000268754' => 'long intergenic non-protein coding RNA 1081',
	'ENSG00000268804' => null,
	'ENSG00000269186' => 'long intergenic non-protein coding RNA 1082',
	'ENSG00000269667' => null,
	'ENSG00000269826' => null,
	'ENSG00000270058' => null,
	'ENSG00000274134' => 'microRNA 6774',
	'ENSG00000275388' => null,
	'ENSG00000277360' => null,
	'ENSG00000279604' => null,
	'ENSMUSG00000041515' => 'interferon regulatory factor 8',
	'ENSMUSG00000042812' => 'forkhead box F1',
	'ENSMUSG00000097087' => 'predicted gene, 26878',
	'ENSMUSG00000097336' => 'Foxf1 adjacent non-coding developmental regulatory RNA',
	'ENSMUSG00000098560' => 'predicted gene, 27530',
	'ENSMUSG00000101886' => 'predicted gene 28324'
)
$gene_name_arr = array(
	'ENSDARG00000015399' => 'foxf1',
	'ENSDARG00000056407' => 'irf8',
	'ENSG00000103241' => 'FOXF1',
	'ENSG00000140968' => 'IRF8',
	'ENSG00000168367' => 'LINC00917',
	'ENSG00000199949' => 'Y_RNA',
	'ENSG00000261177' => 'RP11-805I24.1',
	'ENSG00000268078' => 'RP11-805I24.4',
	'ENSG00000268388' => 'FENDRR',
	'ENSG00000268473' => 'RP11-158I3.1',
	'ENSG00000268505' => 'RP11-805I24.3',
	'ENSG00000268532' => 'RP11-514D23.1',
	'ENSG00000268754' => 'LINC01081',
	'ENSG00000268804' => 'RP11-542M13.3',
	'ENSG00000269186' => 'LINC01082',
	'ENSG00000269667' => 'RP11-542M13.2',
	'ENSG00000269826' => 'RP11-158I3.3',
	'ENSG00000270058' => 'RP11-514D23.3',
	'ENSG00000274134' => 'MIR6774',
	'ENSG00000275388' => 'AC040170.1',
	'ENSG00000277360' => 'AC009108.2',
	'ENSG00000279604' => 'RP11-542M13.1',
	'ENSMUSG00000041515' => 'Irf8',
	'ENSMUSG00000042812' => 'Foxf1',
	'ENSMUSG00000097087' => 'Gm26878',
	'ENSMUSG00000097336' => 'Fendrr',
	'ENSMUSG00000098560' => 'Gm27530',
	'ENSMUSG00000101886' => 'RP23-80D9.2'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0000YG_0001',
			'tax_id' => '7955',
			'chromosome' => '18',
			'seq_start' => '30512223',
			'seq_end' => '30794568',
			'region_length' => '282345',
			'region_type' => 'CGP',
			'el_id' => 'ENSDARG00000056407-ENSDARG00000015399'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0000YG_0002',
			'tax_id' => '9606',
			'chromosome' => '16',
			'seq_start' => '85898803',
			'seq_end' => '86515418',
			'region_length' => '616615',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000140968-ENSG00000103241'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0000YG_0003',
			'tax_id' => '10090',
			'chromosome' => '8',
			'seq_start' => '120736358',
			'seq_end' => '121088144',
			'region_length' => '351786',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000041515-ENSMUSG00000042812'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 11 => 'Adrenal',
	(int) 21 => 'Bladder',
	(int) 27 => 'Brain',
	(int) 39 => 'Breast',
	(int) 52 => 'Colon',
	(int) 67 => 'Heart',
	(int) 78 => 'Kidney',
	(int) 92 => 'Liver',
	(int) 105 => 'Lung',
	(int) 118 => 'Muscle',
	(int) 125 => 'Ovary',
	(int) 140 => 'Placenta',
	(int) 155 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 58
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENSDART00000012374' => array(
		'start' => '30791440',
		'end' => '30794568',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'foxf1-001'
	),
	'ENSDART00000078894' => array(
		'start' => '30512223',
		'end' => '30518127',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'irf8-001'
	),
	'ENST00000262426' => array(
		'start' => '86510527',
		'end' => '86515418',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'FOXF1-001'
	),
	'ENST00000268638' => array(
		'start' => '85898803',
		'end' => '85922609',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'IRF8-001'
	),
	'ENST00000562492' => array(
		'start' => '85914043',
		'end' => '85921371',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'IRF8-009'
	),
	'ENST00000563180' => array(
		'start' => '85902689',
		'end' => '85909882',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'IRF8-002'
	),
	'ENST00000564056' => array(
		'start' => '85903131',
		'end' => '85913312',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'IRF8-007'
	),
	'ENST00000564617' => array(
		'start' => '85902815',
		'end' => '85913160',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'IRF8-011'
	),
	'ENST00000564803' => array(
		'start' => '85902838',
		'end' => '85918800',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'IRF8-006'
	),
	'ENST00000565552' => array(
		'start' => '85899163',
		'end' => '85903156',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'IRF8-004'
	),
	'ENST00000566369' => array(
		'start' => '85908988',
		'end' => '85922296',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'IRF8-003'
	),
	'ENST00000569145' => array(
		'start' => '85913974',
		'end' => '85918489',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'IRF8-008'
	),
	'ENST00000569607' => array(
		'start' => '85914313',
		'end' => '85921274',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'IRF8-010'
	),
	'ENST00000570088' => array(
		'start' => '85899188',
		'end' => '85903531',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'IRF8-005'
	),
	'ENST00000594203' => array(
		'start' => '86331844',
		'end' => '86345644',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00917-002'
	),
	'ENST00000595169' => array(
		'start' => '86337995',
		'end' => '86349639',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00917-004'
	),
	'ENST00000598994' => array(
		'start' => '86338450',
		'end' => '86349680',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00917-007'
	),
	'ENST00000599619' => array(
		'start' => '86338134',
		'end' => '86349683',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00917-005'
	),
	'ENST00000599664' => array(
		'start' => '86338249',
		'end' => '86349683',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00917-006'
	),
	'ENST00000600892' => array(
		'start' => '86331844',
		'end' => '86337556',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00917-003'
	),
	'ENST00000601556' => array(
		'start' => '86331850',
		'end' => '86345679',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00917-001'
	),
	'ENST00000363079' => array(
		'start' => '86275429',
		'end' => '86275523',
		'transcript_biotype' => 'misc_RNA',
		'transcript_name' => 'Y_RNA.1-295'
	),
	'ENST00000563931' => array(
		'start' => '86081409',
		'end' => '86089526',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-805I24.1-001'
	),
	'ENST00000600234' => array(
		'start' => '86158206',
		'end' => '86158798',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-805I24.4-001'
	),
	'ENST00000593604' => array(
		'start' => '86490268',
		'end' => '86508877',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'FENDRR-007'
	),
	'ENST00000594398' => array(
		'start' => '86490226',
		'end' => '86498585',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'FENDRR-004'
	),
	'ENST00000595886' => array(
		'start' => '86474529',
		'end' => '86508860',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'FENDRR-003'
	),
	'ENST00000597578' => array(
		'start' => '86490183',
		'end' => '86508876',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'FENDRR-006'
	),
	'ENST00000598996' => array(
		'start' => '86487706',
		'end' => '86490879',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'FENDRR-002'
	),
	'ENST00000599749' => array(
		'start' => '86487737',
		'end' => '86509099',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'FENDRR-001'
	),
	'ENST00000600553' => array(
		'start' => '86477124',
		'end' => '86490881',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'FENDRR-005'
	),
	'ENST00000596612' => array(
		'start' => '86434830',
		'end' => '86435884',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'RP11-158I3.1-001'
	),
	'ENST00000599841' => array(
		'start' => '86192793',
		'end' => '86198913',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-805I24.3-001'
	),
	'ENST00000599486' => array(
		'start' => '86286427',
		'end' => '86293389',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-514D23.1-001'
	),
	'ENST00000597373' => array(
		'start' => '86225580',
		'end' => '86275745',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01081-001'
	),
	'ENST00000598933' => array(
		'start' => '85935281',
		'end' => '85936223',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-542M13.3-001'
	),
	'ENST00000601250' => array(
		'start' => '86196181',
		'end' => '86199720',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01082-001'
	),
	'ENST00000599411' => array(
		'start' => '85981750',
		'end' => '85984723',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-542M13.2-001'
	),
	'ENST00000595705' => array(
		'start' => '86347387',
		'end' => '86349611',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-158I3.3-001'
	),
	'ENST00000602425' => array(
		'start' => '86221423',
		'end' => '86222729',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-514D23.3-001'
	),
	'ENST00000614651' => array(
		'start' => '85918347',
		'end' => '85918416',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'MIR6774-201'
	),
	'ENST00000613490' => array(
		'start' => '86278538',
		'end' => '86278605',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'AC040170.1-201'
	),
	'ENST00000616245' => array(
		'start' => '86510780',
		'end' => '86510877',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'AC009108.2-201'
	),
	'ENST00000624955' => array(
		'start' => '86035627',
		'end' => '86036419',
		'transcript_biotype' => 'TEC',
		'transcript_name' => 'RP11-542M13.1-001'
	),
	'ENSMUST00000047737' => array(
		'start' => '120736358',
		'end' => '120756694',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Irf8-001'
	),
	'ENSMUST00000160388' => array(
		'start' => '120745480',
		'end' => '120753733',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Irf8-006'
	),
	'ENSMUST00000160594' => array(
		'start' => '120752209',
		'end' => '120753711',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Irf8-007'
	),
	'ENSMUST00000160943' => array(
		'start' => '120739990',
		'end' => '120755204',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Irf8-004'
	),
	'ENSMUST00000162001' => array(
		'start' => '120738639',
		'end' => '120755581',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Irf8-003'
	),
	'ENSMUST00000162658' => array(
		'start' => '120736385',
		'end' => '120753478',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Irf8-005'
	),
	'ENSMUST00000162775' => array(
		'start' => '120736359',
		'end' => '120743234',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Irf8-002'
	),
	'ENSMUST00000181504' => array(
		'start' => '121084386',
		'end' => '121088144',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Foxf1-001'
	),
	'ENSMUST00000181778' => array(
		'start' => '120880206',
		'end' => '120882481',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'Gm26878-001'
	),
	'ENSMUST00000181231' => array(
		'start' => '121058803',
		'end' => '121060413',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'Fendrr-002'
	),
	'ENSMUST00000181530' => array(
		'start' => '121054882',
		'end' => '121083032',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'Fendrr-001'
	),
	'ENSMUST00000182264' => array(
		'start' => '121059119',
		'end' => '121083110',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'Fendrr-003'
	),
	'ENSMUST00000184096' => array(
		'start' => '121084609',
		'end' => '121084706',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'Gm27530-201'
	),
	'ENSMUST00000187913' => array(
		'start' => '121002927',
		'end' => '121003190',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP23-80D9.2-001'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0000YG_0001' => array(
		'genes_in_region' => array(
			'ENSDARG00000015399' => array(
				[maximum depth reached]
			),
			'ENSDARG00000056407' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney',
			(int) 3 => 'Liver',
			(int) 4 => 'Muscle',
			(int) 5 => 'Brain',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Liver',
			(int) 9 => 'Muscle'
		)
	),
	'CIL_0000YG_0002' => array(
		'genes_in_region' => array(
			'ENSG00000103241' => array(
				[maximum depth reached]
			),
			'ENSG00000140968' => array(
				[maximum depth reached]
			),
			'ENSG00000168367' => array(
				[maximum depth reached]
			),
			'ENSG00000261177' => array(
				[maximum depth reached]
			),
			'ENSG00000268078' => array(
				[maximum depth reached]
			),
			'ENSG00000268388' => array(
				[maximum depth reached]
			),
			'ENSG00000268505' => array(
				[maximum depth reached]
			),
			'ENSG00000268532' => array(
				[maximum depth reached]
			),
			'ENSG00000268754' => array(
				[maximum depth reached]
			),
			'ENSG00000268804' => array(
				[maximum depth reached]
			),
			'ENSG00000269186' => array(
				[maximum depth reached]
			),
			'ENSG00000269667' => array(
				[maximum depth reached]
			),
			'ENSG00000269826' => array(
				[maximum depth reached]
			),
			'ENSG00000270058' => array(
				[maximum depth reached]
			),
			'ENSG00000274134' => array(
				[maximum depth reached]
			),
			'ENSG00000279604' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Breast',
			(int) 5 => 'Colon',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Liver',
			(int) 9 => 'Lung',
			(int) 10 => 'Muscle',
			(int) 11 => 'Ovary',
			(int) 12 => 'Placenta',
			(int) 13 => 'Testis',
			(int) 14 => 'Adipose',
			(int) 15 => 'Adrenal',
			(int) 16 => 'Bladder',
			(int) 17 => 'Brain',
			(int) 18 => 'Breast',
			(int) 19 => 'Colon',
			(int) 20 => 'Heart',
			(int) 21 => 'Kidney',
			(int) 22 => 'Liver',
			(int) 23 => 'Lung',
			(int) 24 => 'Muscle',
			(int) 25 => 'Ovary',
			(int) 26 => 'Placenta',
			(int) 27 => 'Testis',
			(int) 28 => 'Liver',
			(int) 29 => 'Muscle',
			(int) 30 => 'Breast',
			(int) 31 => 'Colon',
			(int) 32 => 'Heart',
			(int) 33 => 'Kidney',
			(int) 34 => 'Lung',
			(int) 35 => 'Adipose',
			(int) 36 => 'Brain',
			(int) 37 => 'Heart',
			(int) 38 => 'Kidney',
			(int) 39 => 'Breast',
			(int) 40 => 'Colon',
			(int) 41 => 'Ovary',
			(int) 42 => 'Placenta',
			(int) 43 => 'Testis',
			(int) 44 => 'Ovary',
			(int) 45 => 'Testis',
			(int) 46 => 'Adipose',
			(int) 47 => 'Bladder',
			(int) 48 => 'Breast',
			(int) 49 => 'Heart',
			(int) 50 => 'Kidney',
			(int) 51 => 'Ovary',
			(int) 52 => 'Placenta',
			(int) 53 => 'Testis',
			(int) 54 => 'Bladder',
			(int) 55 => 'Liver',
			(int) 56 => 'Testis',
			(int) 57 => 'Testis',
			(int) 58 => 'Testis',
			(int) 59 => 'Adipose',
			(int) 60 => 'Adrenal',
			(int) 61 => 'Brain',
			(int) 62 => 'Breast',
			(int) 63 => 'Colon',
			(int) 64 => 'Heart',
			(int) 65 => 'Kidney',
			(int) 66 => 'Liver',
			(int) 67 => 'Lung',
			(int) 68 => 'Muscle',
			(int) 69 => 'Ovary',
			(int) 70 => 'Placenta',
			(int) 71 => 'Testis',
			(int) 72 => 'Colon',
			(int) 73 => 'Lung',
			(int) 74 => 'Ovary',
			(int) 75 => 'Placenta',
			(int) 76 => 'Testis',
			(int) 77 => 'Breast',
			(int) 78 => 'Kidney',
			(int) 79 => 'Placenta',
			(int) 80 => 'Testis',
			(int) 81 => 'Testis',
			(int) 82 => 'Adipose',
			(int) 83 => 'Adrenal',
			(int) 84 => 'Brain',
			(int) 85 => 'Breast',
			(int) 86 => 'Colon',
			(int) 87 => 'Heart',
			(int) 88 => 'Kidney',
			(int) 89 => 'Liver',
			(int) 90 => 'Lung',
			(int) 91 => 'Ovary',
			(int) 92 => 'Placenta',
			(int) 93 => 'Testis',
			(int) 94 => 'Adrenal',
			(int) 95 => 'Bladder',
			(int) 96 => 'Brain',
			(int) 97 => 'Breast',
			(int) 98 => 'Colon',
			(int) 99 => 'Heart',
			(int) 100 => 'Kidney',
			(int) 101 => 'Liver',
			(int) 102 => 'Lung',
			(int) 103 => 'Ovary',
			(int) 104 => 'Placenta',
			(int) 105 => 'Liver',
			(int) 106 => 'Lung',
			(int) 107 => 'Placenta',
			(int) 108 => 'Testis',
			(int) 109 => 'Adipose',
			(int) 110 => 'Adrenal',
			(int) 111 => 'Brain',
			(int) 112 => 'Breast',
			(int) 113 => 'Colon',
			(int) 114 => 'Kidney',
			(int) 115 => 'Liver',
			(int) 116 => 'Lung',
			(int) 117 => 'Ovary',
			(int) 118 => 'Placenta',
			(int) 119 => 'Testis',
			(int) 120 => 'Ovary',
			(int) 121 => 'Testis',
			(int) 122 => 'Bladder',
			(int) 123 => 'Colon',
			(int) 124 => 'Lung',
			(int) 125 => 'Placenta',
			(int) 126 => 'Testis',
			(int) 127 => 'Adipose',
			(int) 128 => 'Adrenal',
			(int) 129 => 'Breast',
			(int) 130 => 'Colon',
			(int) 131 => 'Kidney',
			(int) 132 => 'Ovary',
			(int) 133 => 'Placenta',
			(int) 134 => 'Testis',
			(int) 135 => 'Breast',
			(int) 136 => 'Colon',
			(int) 137 => 'Liver',
			(int) 138 => 'Lung',
			(int) 139 => 'Ovary',
			(int) 140 => 'Placenta',
			(int) 141 => 'Testis',
			(int) 142 => 'Adipose',
			(int) 143 => 'Adrenal',
			(int) 144 => 'Brain',
			(int) 145 => 'Breast',
			(int) 146 => 'Colon',
			(int) 147 => 'Heart',
			(int) 148 => 'Kidney',
			(int) 149 => 'Liver',
			(int) 150 => 'Lung',
			(int) 151 => 'Muscle',
			(int) 152 => 'Ovary',
			(int) 153 => 'Testis',
			(int) 154 => 'Adipose',
			(int) 155 => 'Adrenal',
			(int) 156 => 'Brain',
			(int) 157 => 'Colon',
			(int) 158 => 'Lung',
			(int) 159 => 'Ovary',
			(int) 160 => 'Placenta',
			(int) 161 => 'Testis',
			(int) 162 => 'Adipose',
			(int) 163 => 'Adrenal',
			(int) 164 => 'Brain',
			(int) 165 => 'Colon',
			(int) 166 => 'Testis'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0000YG_0003',
		'tax_id' => '10090',
		'chromosome' => '8',
		'seq_start' => '120736358',
		'seq_end' => '121088144',
		'region_length' => '351786',
		'region_type' => 'CGP',
		'el_id' => 'ENSMUSG00000041515-ENSMUSG00000042812'
	)
)
$gene_el = array(
	'ENST00000624955' => array(
		'Adrenal' => array(
			'average_FPKM' => '0.050',
			'stddev_FPKM' => '0.00'
		),
		'Brain' => array(
			'average_FPKM' => '0.056',
			'stddev_FPKM' => '0.00'
		),
		'Colon' => array(
			'average_FPKM' => '0.213',
			'stddev_FPKM' => '0.00'
		),
		'Testis' => array(
			'average_FPKM' => '0.023',
			'stddev_FPKM' => '0.00'
		)
	)
)
$gene_key = 'ENSG00000279604'
$is_first = false
$tran_el = array(
	'Adrenal' => array(
		'average_FPKM' => '0.050',
		'stddev_FPKM' => '0.00'
	),
	'Brain' => array(
		'average_FPKM' => '0.056',
		'stddev_FPKM' => '0.00'
	),
	'Colon' => array(
		'average_FPKM' => '0.213',
		'stddev_FPKM' => '0.00'
	),
	'Testis' => array(
		'average_FPKM' => '0.023',
		'stddev_FPKM' => '0.00'
	)
)
$tran_key = 'ENST00000624955'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]
Code Context

        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0000YG_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0000YG_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSDARG00000015399' => 'forkhead box F1',
		'ENSDARG00000056407' => 'interferon regulatory factor 8',
		'ENSG00000103241' => 'forkhead box F1',
		'ENSG00000140968' => 'interferon regulatory factor 8',
		'ENSG00000168367' => 'long intergenic non-protein coding RNA 917',
		'ENSG00000199949' => 'Y RNA',
		'ENSG00000261177' => null,
		'ENSG00000268078' => null,
		'ENSG00000268388' => 'FOXF1 adjacent non-coding developmental regulatory RNA',
		'ENSG00000268473' => null,
		'ENSG00000268505' => null,
		'ENSG00000268532' => null,
		'ENSG00000268754' => 'long intergenic non-protein coding RNA 1081',
		'ENSG00000268804' => null,
		'ENSG00000269186' => 'long intergenic non-protein coding RNA 1082',
		'ENSG00000269667' => null,
		'ENSG00000269826' => null,
		'ENSG00000270058' => null,
		'ENSG00000274134' => 'microRNA 6774',
		'ENSG00000275388' => null,
		'ENSG00000277360' => null,
		'ENSG00000279604' => null,
		'ENSMUSG00000041515' => 'interferon regulatory factor 8',
		'ENSMUSG00000042812' => 'forkhead box F1',
		'ENSMUSG00000097087' => 'predicted gene, 26878',
		'ENSMUSG00000097336' => 'Foxf1 adjacent non-coding developmental regulatory RNA',
		'ENSMUSG00000098560' => 'predicted gene, 27530',
		'ENSMUSG00000101886' => 'predicted gene 28324'
	),
	'gene_name_arr' => array(
		'ENSDARG00000015399' => 'foxf1',
		'ENSDARG00000056407' => 'irf8',
		'ENSG00000103241' => 'FOXF1',
		'ENSG00000140968' => 'IRF8',
		'ENSG00000168367' => 'LINC00917',
		'ENSG00000199949' => 'Y_RNA',
		'ENSG00000261177' => 'RP11-805I24.1',
		'ENSG00000268078' => 'RP11-805I24.4',
		'ENSG00000268388' => 'FENDRR',
		'ENSG00000268473' => 'RP11-158I3.1',
		'ENSG00000268505' => 'RP11-805I24.3',
		'ENSG00000268532' => 'RP11-514D23.1',
		'ENSG00000268754' => 'LINC01081',
		'ENSG00000268804' => 'RP11-542M13.3',
		'ENSG00000269186' => 'LINC01082',
		'ENSG00000269667' => 'RP11-542M13.2',
		'ENSG00000269826' => 'RP11-158I3.3',
		'ENSG00000270058' => 'RP11-514D23.3',
		'ENSG00000274134' => 'MIR6774',
		'ENSG00000275388' => 'AC040170.1',
		'ENSG00000277360' => 'AC009108.2',
		'ENSG00000279604' => 'RP11-542M13.1',
		'ENSMUSG00000041515' => 'Irf8',
		'ENSMUSG00000042812' => 'Foxf1',
		'ENSMUSG00000097087' => 'Gm26878',
		'ENSMUSG00000097336' => 'Fendrr',
		'ENSMUSG00000098560' => 'Gm27530',
		'ENSMUSG00000101886' => 'RP23-80D9.2'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 11 => 'Adrenal',
		(int) 21 => 'Bladder',
		(int) 27 => 'Brain',
		(int) 39 => 'Breast',
		(int) 52 => 'Colon',
		(int) 67 => 'Heart',
		(int) 78 => 'Kidney',
		(int) 92 => 'Liver',
		(int) 105 => 'Lung',
		(int) 118 => 'Muscle',
		(int) 125 => 'Ovary',
		(int) 140 => 'Placenta',
		(int) 155 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 58,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENSDART00000012374' => array(
			'start' => '30791440',
			'end' => '30794568',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'foxf1-001'
		),
		'ENSDART00000078894' => array(
			'start' => '30512223',
			'end' => '30518127',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'irf8-001'
		),
		'ENST00000262426' => array(
			'start' => '86510527',
			'end' => '86515418',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'FOXF1-001'
		),
		'ENST00000268638' => array(
			'start' => '85898803',
			'end' => '85922609',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'IRF8-001'
		),
		'ENST00000562492' => array(
			'start' => '85914043',
			'end' => '85921371',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'IRF8-009'
		),
		'ENST00000563180' => array(
			'start' => '85902689',
			'end' => '85909882',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'IRF8-002'
		),
		'ENST00000564056' => array(
			'start' => '85903131',
			'end' => '85913312',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'IRF8-007'
		),
		'ENST00000564617' => array(
			'start' => '85902815',
			'end' => '85913160',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'IRF8-011'
		),
		'ENST00000564803' => array(
			'start' => '85902838',
			'end' => '85918800',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'IRF8-006'
		),
		'ENST00000565552' => array(
			'start' => '85899163',
			'end' => '85903156',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'IRF8-004'
		),
		'ENST00000566369' => array(
			'start' => '85908988',
			'end' => '85922296',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'IRF8-003'
		),
		'ENST00000569145' => array(
			'start' => '85913974',
			'end' => '85918489',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'IRF8-008'
		),
		'ENST00000569607' => array(
			'start' => '85914313',
			'end' => '85921274',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'IRF8-010'
		),
		'ENST00000570088' => array(
			'start' => '85899188',
			'end' => '85903531',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'IRF8-005'
		),
		'ENST00000594203' => array(
			'start' => '86331844',
			'end' => '86345644',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00917-002'
		),
		'ENST00000595169' => array(
			'start' => '86337995',
			'end' => '86349639',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00917-004'
		),
		'ENST00000598994' => array(
			'start' => '86338450',
			'end' => '86349680',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00917-007'
		),
		'ENST00000599619' => array(
			'start' => '86338134',
			'end' => '86349683',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00917-005'
		),
		'ENST00000599664' => array(
			'start' => '86338249',
			'end' => '86349683',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00917-006'
		),
		'ENST00000600892' => array(
			'start' => '86331844',
			'end' => '86337556',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00917-003'
		),
		'ENST00000601556' => array(
			'start' => '86331850',
			'end' => '86345679',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00917-001'
		),
		'ENST00000363079' => array(
			'start' => '86275429',
			'end' => '86275523',
			'transcript_biotype' => 'misc_RNA',
			'transcript_name' => 'Y_RNA.1-295'
		),
		'ENST00000563931' => array(
			'start' => '86081409',
			'end' => '86089526',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-805I24.1-001'
		),
		'ENST00000600234' => array(
			'start' => '86158206',
			'end' => '86158798',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-805I24.4-001'
		),
		'ENST00000593604' => array(
			'start' => '86490268',
			'end' => '86508877',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'FENDRR-007'
		),
		'ENST00000594398' => array(
			'start' => '86490226',
			'end' => '86498585',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'FENDRR-004'
		),
		'ENST00000595886' => array(
			'start' => '86474529',
			'end' => '86508860',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'FENDRR-003'
		),
		'ENST00000597578' => array(
			'start' => '86490183',
			'end' => '86508876',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'FENDRR-006'
		),
		'ENST00000598996' => array(
			'start' => '86487706',
			'end' => '86490879',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'FENDRR-002'
		),
		'ENST00000599749' => array(
			'start' => '86487737',
			'end' => '86509099',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'FENDRR-001'
		),
		'ENST00000600553' => array(
			'start' => '86477124',
			'end' => '86490881',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'FENDRR-005'
		),
		'ENST00000596612' => array(
			'start' => '86434830',
			'end' => '86435884',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'RP11-158I3.1-001'
		),
		'ENST00000599841' => array(
			'start' => '86192793',
			'end' => '86198913',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-805I24.3-001'
		),
		'ENST00000599486' => array(
			'start' => '86286427',
			'end' => '86293389',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-514D23.1-001'
		),
		'ENST00000597373' => array(
			'start' => '86225580',
			'end' => '86275745',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01081-001'
		),
		'ENST00000598933' => array(
			'start' => '85935281',
			'end' => '85936223',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-542M13.3-001'
		),
		'ENST00000601250' => array(
			'start' => '86196181',
			'end' => '86199720',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC01082-001'
		),
		'ENST00000599411' => array(
			'start' => '85981750',
			'end' => '85984723',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-542M13.2-001'
		),
		'ENST00000595705' => array(
			'start' => '86347387',
			'end' => '86349611',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-158I3.3-001'
		),
		'ENST00000602425' => array(
			'start' => '86221423',
			'end' => '86222729',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-514D23.3-001'
		),
		'ENST00000614651' => array(
			'start' => '85918347',
			'end' => '85918416',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'MIR6774-201'
		),
		'ENST00000613490' => array(
			'start' => '86278538',
			'end' => '86278605',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'AC040170.1-201'
		),
		'ENST00000616245' => array(
			'start' => '86510780',
			'end' => '86510877',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'AC009108.2-201'
		),
		'ENST00000624955' => array(
			'start' => '86035627',
			'end' => '86036419',
			'transcript_biotype' => 'TEC',
			'transcript_name' => 'RP11-542M13.1-001'
		),
		'ENSMUST00000047737' => array(
			'start' => '120736358',
			'end' => '120756694',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Irf8-001'
		),
		'ENSMUST00000160388' => array(
			'start' => '120745480',
			'end' => '120753733',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Irf8-006'
		),
		'ENSMUST00000160594' => array(
			'start' => '120752209',
			'end' => '120753711',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Irf8-007'
		),
		'ENSMUST00000160943' => array(
			'start' => '120739990',
			'end' => '120755204',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Irf8-004'
		),
		'ENSMUST00000162001' => array(
			'start' => '120738639',
			'end' => '120755581',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Irf8-003'
		),
		'ENSMUST00000162658' => array(
			'start' => '120736385',
			'end' => '120753478',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Irf8-005'
		),
		'ENSMUST00000162775' => array(
			'start' => '120736359',
			'end' => '120743234',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Irf8-002'
		),
		'ENSMUST00000181504' => array(
			'start' => '121084386',
			'end' => '121088144',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Foxf1-001'
		),
		'ENSMUST00000181778' => array(
			'start' => '120880206',
			'end' => '120882481',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'Gm26878-001'
		),
		'ENSMUST00000181231' => array(
			'start' => '121058803',
			'end' => '121060413',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'Fendrr-002'
		),
		'ENSMUST00000181530' => array(
			'start' => '121054882',
			'end' => '121083032',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'Fendrr-001'
		),
		'ENSMUST00000182264' => array(
			'start' => '121059119',
			'end' => '121083110',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'Fendrr-003'
		),
		'ENSMUST00000184096' => array(
			'start' => '121084609',
			'end' => '121084706',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'Gm27530-201'
		),
		'ENSMUST00000187913' => array(
			'start' => '121002927',
			'end' => '121003190',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP23-80D9.2-001'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0000YG_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0000YG_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0000YG_0001' => array(
		'genes_in_region' => array(
			'ENSDARG00000015399' => array(
				[maximum depth reached]
			),
			'ENSDARG00000056407' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney',
			(int) 3 => 'Liver',
			(int) 4 => 'Muscle',
			(int) 5 => 'Brain',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Liver',
			(int) 9 => 'Muscle'
		)
	),
	'CIL_0000YG_0002' => array(
		'genes_in_region' => array(
			'ENSG00000103241' => array(
				[maximum depth reached]
			),
			'ENSG00000140968' => array(
				[maximum depth reached]
			),
			'ENSG00000168367' => array(
				[maximum depth reached]
			),
			'ENSG00000261177' => array(
				[maximum depth reached]
			),
			'ENSG00000268078' => array(
				[maximum depth reached]
			),
			'ENSG00000268388' => array(
				[maximum depth reached]
			),
			'ENSG00000268505' => array(
				[maximum depth reached]
			),
			'ENSG00000268532' => array(
				[maximum depth reached]
			),
			'ENSG00000268754' => array(
				[maximum depth reached]
			),
			'ENSG00000268804' => array(
				[maximum depth reached]
			),
			'ENSG00000269186' => array(
				[maximum depth reached]
			),
			'ENSG00000269667' => array(
				[maximum depth reached]
			),
			'ENSG00000269826' => array(
				[maximum depth reached]
			),
			'ENSG00000270058' => array(
				[maximum depth reached]
			),
			'ENSG00000274134' => array(
				[maximum depth reached]
			),
			'ENSG00000279604' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Breast',
			(int) 5 => 'Colon',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Liver',
			(int) 9 => 'Lung',
			(int) 10 => 'Muscle',
			(int) 11 => 'Ovary',
			(int) 12 => 'Placenta',
			(int) 13 => 'Testis',
			(int) 14 => 'Adipose',
			(int) 15 => 'Adrenal',
			(int) 16 => 'Bladder',
			(int) 17 => 'Brain',
			(int) 18 => 'Breast',
			(int) 19 => 'Colon',
			(int) 20 => 'Heart',
			(int) 21 => 'Kidney',
			(int) 22 => 'Liver',
			(int) 23 => 'Lung',
			(int) 24 => 'Muscle',
			(int) 25 => 'Ovary',
			(int) 26 => 'Placenta',
			(int) 27 => 'Testis',
			(int) 28 => 'Liver',
			(int) 29 => 'Muscle',
			(int) 30 => 'Breast',
			(int) 31 => 'Colon',
			(int) 32 => 'Heart',
			(int) 33 => 'Kidney',
			(int) 34 => 'Lung',
			(int) 35 => 'Adipose',
			(int) 36 => 'Brain',
			(int) 37 => 'Heart',
			(int) 38 => 'Kidney',
			(int) 39 => 'Breast',
			(int) 40 => 'Colon',
			(int) 41 => 'Ovary',
			(int) 42 => 'Placenta',
			(int) 43 => 'Testis',
			(int) 44 => 'Ovary',
			(int) 45 => 'Testis',
			(int) 46 => 'Adipose',
			(int) 47 => 'Bladder',
			(int) 48 => 'Breast',
			(int) 49 => 'Heart',
			(int) 50 => 'Kidney',
			(int) 51 => 'Ovary',
			(int) 52 => 'Placenta',
			(int) 53 => 'Testis',
			(int) 54 => 'Bladder',
			(int) 55 => 'Liver',
			(int) 56 => 'Testis',
			(int) 57 => 'Testis',
			(int) 58 => 'Testis',
			(int) 59 => 'Adipose',
			(int) 60 => 'Adrenal',
			(int) 61 => 'Brain',
			(int) 62 => 'Breast',
			(int) 63 => 'Colon',
			(int) 64 => 'Heart',
			(int) 65 => 'Kidney',
			(int) 66 => 'Liver',
			(int) 67 => 'Lung',
			(int) 68 => 'Muscle',
			(int) 69 => 'Ovary',
			(int) 70 => 'Placenta',
			(int) 71 => 'Testis',
			(int) 72 => 'Colon',
			(int) 73 => 'Lung',
			(int) 74 => 'Ovary',
			(int) 75 => 'Placenta',
			(int) 76 => 'Testis',
			(int) 77 => 'Breast',
			(int) 78 => 'Kidney',
			(int) 79 => 'Placenta',
			(int) 80 => 'Testis',
			(int) 81 => 'Testis',
			(int) 82 => 'Adipose',
			(int) 83 => 'Adrenal',
			(int) 84 => 'Brain',
			(int) 85 => 'Breast',
			(int) 86 => 'Colon',
			(int) 87 => 'Heart',
			(int) 88 => 'Kidney',
			(int) 89 => 'Liver',
			(int) 90 => 'Lung',
			(int) 91 => 'Ovary',
			(int) 92 => 'Placenta',
			(int) 93 => 'Testis',
			(int) 94 => 'Adrenal',
			(int) 95 => 'Bladder',
			(int) 96 => 'Brain',
			(int) 97 => 'Breast',
			(int) 98 => 'Colon',
			(int) 99 => 'Heart',
			(int) 100 => 'Kidney',
			(int) 101 => 'Liver',
			(int) 102 => 'Lung',
			(int) 103 => 'Ovary',
			(int) 104 => 'Placenta',
			(int) 105 => 'Liver',
			(int) 106 => 'Lung',
			(int) 107 => 'Placenta',
			(int) 108 => 'Testis',
			(int) 109 => 'Adipose',
			(int) 110 => 'Adrenal',
			(int) 111 => 'Brain',
			(int) 112 => 'Breast',
			(int) 113 => 'Colon',
			(int) 114 => 'Kidney',
			(int) 115 => 'Liver',
			(int) 116 => 'Lung',
			(int) 117 => 'Ovary',
			(int) 118 => 'Placenta',
			(int) 119 => 'Testis',
			(int) 120 => 'Ovary',
			(int) 121 => 'Testis',
			(int) 122 => 'Bladder',
			(int) 123 => 'Colon',
			(int) 124 => 'Lung',
			(int) 125 => 'Placenta',
			(int) 126 => 'Testis',
			(int) 127 => 'Adipose',
			(int) 128 => 'Adrenal',
			(int) 129 => 'Breast',
			(int) 130 => 'Colon',
			(int) 131 => 'Kidney',
			(int) 132 => 'Ovary',
			(int) 133 => 'Placenta',
			(int) 134 => 'Testis',
			(int) 135 => 'Breast',
			(int) 136 => 'Colon',
			(int) 137 => 'Liver',
			(int) 138 => 'Lung',
			(int) 139 => 'Ovary',
			(int) 140 => 'Placenta',
			(int) 141 => 'Testis',
			(int) 142 => 'Adipose',
			(int) 143 => 'Adrenal',
			(int) 144 => 'Brain',
			(int) 145 => 'Breast',
			(int) 146 => 'Colon',
			(int) 147 => 'Heart',
			(int) 148 => 'Kidney',
			(int) 149 => 'Liver',
			(int) 150 => 'Lung',
			(int) 151 => 'Muscle',
			(int) 152 => 'Ovary',
			(int) 153 => 'Testis',
			(int) 154 => 'Adipose',
			(int) 155 => 'Adrenal',
			(int) 156 => 'Brain',
			(int) 157 => 'Colon',
			(int) 158 => 'Lung',
			(int) 159 => 'Ovary',
			(int) 160 => 'Placenta',
			(int) 161 => 'Testis',
			(int) 162 => 'Adipose',
			(int) 163 => 'Adrenal',
			(int) 164 => 'Brain',
			(int) 165 => 'Colon',
			(int) 166 => 'Testis'
		)
	)
)
$gene_desc_arr = array(
	'ENSDARG00000015399' => 'forkhead box F1',
	'ENSDARG00000056407' => 'interferon regulatory factor 8',
	'ENSG00000103241' => 'forkhead box F1',
	'ENSG00000140968' => 'interferon regulatory factor 8',
	'ENSG00000168367' => 'long intergenic non-protein coding RNA 917',
	'ENSG00000199949' => 'Y RNA',
	'ENSG00000261177' => null,
	'ENSG00000268078' => null,
	'ENSG00000268388' => 'FOXF1 adjacent non-coding developmental regulatory RNA',
	'ENSG00000268473' => null,
	'ENSG00000268505' => null,
	'ENSG00000268532' => null,
	'ENSG00000268754' => 'long intergenic non-protein coding RNA 1081',
	'ENSG00000268804' => null,
	'ENSG00000269186' => 'long intergenic non-protein coding RNA 1082',
	'ENSG00000269667' => null,
	'ENSG00000269826' => null,
	'ENSG00000270058' => null,
	'ENSG00000274134' => 'microRNA 6774',
	'ENSG00000275388' => null,
	'ENSG00000277360' => null,
	'ENSG00000279604' => null,
	'ENSMUSG00000041515' => 'interferon regulatory factor 8',
	'ENSMUSG00000042812' => 'forkhead box F1',
	'ENSMUSG00000097087' => 'predicted gene, 26878',
	'ENSMUSG00000097336' => 'Foxf1 adjacent non-coding developmental regulatory RNA',
	'ENSMUSG00000098560' => 'predicted gene, 27530',
	'ENSMUSG00000101886' => 'predicted gene 28324'
)
$gene_name_arr = array(
	'ENSDARG00000015399' => 'foxf1',
	'ENSDARG00000056407' => 'irf8',
	'ENSG00000103241' => 'FOXF1',
	'ENSG00000140968' => 'IRF8',
	'ENSG00000168367' => 'LINC00917',
	'ENSG00000199949' => 'Y_RNA',
	'ENSG00000261177' => 'RP11-805I24.1',
	'ENSG00000268078' => 'RP11-805I24.4',
	'ENSG00000268388' => 'FENDRR',
	'ENSG00000268473' => 'RP11-158I3.1',
	'ENSG00000268505' => 'RP11-805I24.3',
	'ENSG00000268532' => 'RP11-514D23.1',
	'ENSG00000268754' => 'LINC01081',
	'ENSG00000268804' => 'RP11-542M13.3',
	'ENSG00000269186' => 'LINC01082',
	'ENSG00000269667' => 'RP11-542M13.2',
	'ENSG00000269826' => 'RP11-158I3.3',
	'ENSG00000270058' => 'RP11-514D23.3',
	'ENSG00000274134' => 'MIR6774',
	'ENSG00000275388' => 'AC040170.1',
	'ENSG00000277360' => 'AC009108.2',
	'ENSG00000279604' => 'RP11-542M13.1',
	'ENSMUSG00000041515' => 'Irf8',
	'ENSMUSG00000042812' => 'Foxf1',
	'ENSMUSG00000097087' => 'Gm26878',
	'ENSMUSG00000097336' => 'Fendrr',
	'ENSMUSG00000098560' => 'Gm27530',
	'ENSMUSG00000101886' => 'RP23-80D9.2'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0000YG_0001',
			'tax_id' => '7955',
			'chromosome' => '18',
			'seq_start' => '30512223',
			'seq_end' => '30794568',
			'region_length' => '282345',
			'region_type' => 'CGP',
			'el_id' => 'ENSDARG00000056407-ENSDARG00000015399'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0000YG_0002',
			'tax_id' => '9606',
			'chromosome' => '16',
			'seq_start' => '85898803',
			'seq_end' => '86515418',
			'region_length' => '616615',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000140968-ENSG00000103241'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0000YG_0003',
			'tax_id' => '10090',
			'chromosome' => '8',
			'seq_start' => '120736358',
			'seq_end' => '121088144',
			'region_length' => '351786',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000041515-ENSMUSG00000042812'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 11 => 'Adrenal',
	(int) 21 => 'Bladder',
	(int) 27 => 'Brain',
	(int) 39 => 'Breast',
	(int) 52 => 'Colon',
	(int) 67 => 'Heart',
	(int) 78 => 'Kidney',
	(int) 92 => 'Liver',
	(int) 105 => 'Lung',
	(int) 118 => 'Muscle',
	(int) 125 => 'Ovary',
	(int) 140 => 'Placenta',
	(int) 155 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 58
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENSDART00000012374' => array(
		'start' => '30791440',
		'end' => '30794568',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'foxf1-001'
	),
	'ENSDART00000078894' => array(
		'start' => '30512223',
		'end' => '30518127',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'irf8-001'
	),
	'ENST00000262426' => array(
		'start' => '86510527',
		'end' => '86515418',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'FOXF1-001'
	),
	'ENST00000268638' => array(
		'start' => '85898803',
		'end' => '85922609',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'IRF8-001'
	),
	'ENST00000562492' => array(
		'start' => '85914043',
		'end' => '85921371',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'IRF8-009'
	),
	'ENST00000563180' => array(
		'start' => '85902689',
		'end' => '85909882',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'IRF8-002'
	),
	'ENST00000564056' => array(
		'start' => '85903131',
		'end' => '85913312',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'IRF8-007'
	),
	'ENST00000564617' => array(
		'start' => '85902815',
		'end' => '85913160',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'IRF8-011'
	),
	'ENST00000564803' => array(
		'start' => '85902838',
		'end' => '85918800',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'IRF8-006'
	),
	'ENST00000565552' => array(
		'start' => '85899163',
		'end' => '85903156',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'IRF8-004'
	),
	'ENST00000566369' => array(
		'start' => '85908988',
		'end' => '85922296',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'IRF8-003'
	),
	'ENST00000569145' => array(
		'start' => '85913974',
		'end' => '85918489',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'IRF8-008'
	),
	'ENST00000569607' => array(
		'start' => '85914313',
		'end' => '85921274',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'IRF8-010'
	),
	'ENST00000570088' => array(
		'start' => '85899188',
		'end' => '85903531',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'IRF8-005'
	),
	'ENST00000594203' => array(
		'start' => '86331844',
		'end' => '86345644',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00917-002'
	),
	'ENST00000595169' => array(
		'start' => '86337995',
		'end' => '86349639',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00917-004'
	),
	'ENST00000598994' => array(
		'start' => '86338450',
		'end' => '86349680',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00917-007'
	),
	'ENST00000599619' => array(
		'start' => '86338134',
		'end' => '86349683',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00917-005'
	),
	'ENST00000599664' => array(
		'start' => '86338249',
		'end' => '86349683',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00917-006'
	),
	'ENST00000600892' => array(
		'start' => '86331844',
		'end' => '86337556',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00917-003'
	),
	'ENST00000601556' => array(
		'start' => '86331850',
		'end' => '86345679',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00917-001'
	),
	'ENST00000363079' => array(
		'start' => '86275429',
		'end' => '86275523',
		'transcript_biotype' => 'misc_RNA',
		'transcript_name' => 'Y_RNA.1-295'
	),
	'ENST00000563931' => array(
		'start' => '86081409',
		'end' => '86089526',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-805I24.1-001'
	),
	'ENST00000600234' => array(
		'start' => '86158206',
		'end' => '86158798',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-805I24.4-001'
	),
	'ENST00000593604' => array(
		'start' => '86490268',
		'end' => '86508877',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'FENDRR-007'
	),
	'ENST00000594398' => array(
		'start' => '86490226',
		'end' => '86498585',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'FENDRR-004'
	),
	'ENST00000595886' => array(
		'start' => '86474529',
		'end' => '86508860',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'FENDRR-003'
	),
	'ENST00000597578' => array(
		'start' => '86490183',
		'end' => '86508876',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'FENDRR-006'
	),
	'ENST00000598996' => array(
		'start' => '86487706',
		'end' => '86490879',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'FENDRR-002'
	),
	'ENST00000599749' => array(
		'start' => '86487737',
		'end' => '86509099',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'FENDRR-001'
	),
	'ENST00000600553' => array(
		'start' => '86477124',
		'end' => '86490881',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'FENDRR-005'
	),
	'ENST00000596612' => array(
		'start' => '86434830',
		'end' => '86435884',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'RP11-158I3.1-001'
	),
	'ENST00000599841' => array(
		'start' => '86192793',
		'end' => '86198913',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-805I24.3-001'
	),
	'ENST00000599486' => array(
		'start' => '86286427',
		'end' => '86293389',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-514D23.1-001'
	),
	'ENST00000597373' => array(
		'start' => '86225580',
		'end' => '86275745',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01081-001'
	),
	'ENST00000598933' => array(
		'start' => '85935281',
		'end' => '85936223',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-542M13.3-001'
	),
	'ENST00000601250' => array(
		'start' => '86196181',
		'end' => '86199720',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC01082-001'
	),
	'ENST00000599411' => array(
		'start' => '85981750',
		'end' => '85984723',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-542M13.2-001'
	),
	'ENST00000595705' => array(
		'start' => '86347387',
		'end' => '86349611',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-158I3.3-001'
	),
	'ENST00000602425' => array(
		'start' => '86221423',
		'end' => '86222729',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-514D23.3-001'
	),
	'ENST00000614651' => array(
		'start' => '85918347',
		'end' => '85918416',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'MIR6774-201'
	),
	'ENST00000613490' => array(
		'start' => '86278538',
		'end' => '86278605',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'AC040170.1-201'
	),
	'ENST00000616245' => array(
		'start' => '86510780',
		'end' => '86510877',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'AC009108.2-201'
	),
	'ENST00000624955' => array(
		'start' => '86035627',
		'end' => '86036419',
		'transcript_biotype' => 'TEC',
		'transcript_name' => 'RP11-542M13.1-001'
	),
	'ENSMUST00000047737' => array(
		'start' => '120736358',
		'end' => '120756694',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Irf8-001'
	),
	'ENSMUST00000160388' => array(
		'start' => '120745480',
		'end' => '120753733',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Irf8-006'
	),
	'ENSMUST00000160594' => array(
		'start' => '120752209',
		'end' => '120753711',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Irf8-007'
	),
	'ENSMUST00000160943' => array(
		'start' => '120739990',
		'end' => '120755204',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Irf8-004'
	),
	'ENSMUST00000162001' => array(
		'start' => '120738639',
		'end' => '120755581',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Irf8-003'
	),
	'ENSMUST00000162658' => array(
		'start' => '120736385',
		'end' => '120753478',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Irf8-005'
	),
	'ENSMUST00000162775' => array(
		'start' => '120736359',
		'end' => '120743234',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Irf8-002'
	),
	'ENSMUST00000181504' => array(
		'start' => '121084386',
		'end' => '121088144',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Foxf1-001'
	),
	'ENSMUST00000181778' => array(
		'start' => '120880206',
		'end' => '120882481',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'Gm26878-001'
	),
	'ENSMUST00000181231' => array(
		'start' => '121058803',
		'end' => '121060413',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'Fendrr-002'
	),
	'ENSMUST00000181530' => array(
		'start' => '121054882',
		'end' => '121083032',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'Fendrr-001'
	),
	'ENSMUST00000182264' => array(
		'start' => '121059119',
		'end' => '121083110',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'Fendrr-003'
	),
	'ENSMUST00000184096' => array(
		'start' => '121084609',
		'end' => '121084706',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'Gm27530-201'
	),
	'ENSMUST00000187913' => array(
		'start' => '121002927',
		'end' => '121003190',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP23-80D9.2-001'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0000YG_0001' => array(
		'genes_in_region' => array(
			'ENSDARG00000015399' => array(
				[maximum depth reached]
			),
			'ENSDARG00000056407' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney',
			(int) 3 => 'Liver',
			(int) 4 => 'Muscle',
			(int) 5 => 'Brain',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Liver',
			(int) 9 => 'Muscle'
		)
	),
	'CIL_0000YG_0002' => array(
		'genes_in_region' => array(
			'ENSG00000103241' => array(
				[maximum depth reached]
			),
			'ENSG00000140968' => array(
				[maximum depth reached]
			),
			'ENSG00000168367' => array(
				[maximum depth reached]
			),
			'ENSG00000261177' => array(
				[maximum depth reached]
			),
			'ENSG00000268078' => array(
				[maximum depth reached]
			),
			'ENSG00000268388' => array(
				[maximum depth reached]
			),
			'ENSG00000268505' => array(
				[maximum depth reached]
			),
			'ENSG00000268532' => array(
				[maximum depth reached]
			),
			'ENSG00000268754' => array(
				[maximum depth reached]
			),
			'ENSG00000268804' => array(
				[maximum depth reached]
			),
			'ENSG00000269186' => array(
				[maximum depth reached]
			),
			'ENSG00000269667' => array(
				[maximum depth reached]
			),
			'ENSG00000269826' => array(
				[maximum depth reached]
			),
			'ENSG00000270058' => array(
				[maximum depth reached]
			),
			'ENSG00000274134' => array(
				[maximum depth reached]
			),
			'ENSG00000279604' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Breast',
			(int) 5 => 'Colon',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Liver',
			(int) 9 => 'Lung',
			(int) 10 => 'Muscle',
			(int) 11 => 'Ovary',
			(int) 12 => 'Placenta',
			(int) 13 => 'Testis',
			(int) 14 => 'Adipose',
			(int) 15 => 'Adrenal',
			(int) 16 => 'Bladder',
			(int) 17 => 'Brain',
			(int) 18 => 'Breast',
			(int) 19 => 'Colon',
			(int) 20 => 'Heart',
			(int) 21 => 'Kidney',
			(int) 22 => 'Liver',
			(int) 23 => 'Lung',
			(int) 24 => 'Muscle',
			(int) 25 => 'Ovary',
			(int) 26 => 'Placenta',
			(int) 27 => 'Testis',
			(int) 28 => 'Liver',
			(int) 29 => 'Muscle',
			(int) 30 => 'Breast',
			(int) 31 => 'Colon',
			(int) 32 => 'Heart',
			(int) 33 => 'Kidney',
			(int) 34 => 'Lung',
			(int) 35 => 'Adipose',
			(int) 36 => 'Brain',
			(int) 37 => 'Heart',
			(int) 38 => 'Kidney',
			(int) 39 => 'Breast',
			(int) 40 => 'Colon',
			(int) 41 => 'Ovary',
			(int) 42 => 'Placenta',
			(int) 43 => 'Testis',
			(int) 44 => 'Ovary',
			(int) 45 => 'Testis',
			(int) 46 => 'Adipose',
			(int) 47 => 'Bladder',
			(int) 48 => 'Breast',
			(int) 49 => 'Heart',
			(int) 50 => 'Kidney',
			(int) 51 => 'Ovary',
			(int) 52 => 'Placenta',
			(int) 53 => 'Testis',
			(int) 54 => 'Bladder',
			(int) 55 => 'Liver',
			(int) 56 => 'Testis',
			(int) 57 => 'Testis',
			(int) 58 => 'Testis',
			(int) 59 => 'Adipose',
			(int) 60 => 'Adrenal',
			(int) 61 => 'Brain',
			(int) 62 => 'Breast',
			(int) 63 => 'Colon',
			(int) 64 => 'Heart',
			(int) 65 => 'Kidney',
			(int) 66 => 'Liver',
			(int) 67 => 'Lung',
			(int) 68 => 'Muscle',
			(int) 69 => 'Ovary',
			(int) 70 => 'Placenta',
			(int) 71 => 'Testis',
			(int) 72 => 'Colon',
			(int) 73 => 'Lung',
			(int) 74 => 'Ovary',
			(int) 75 => 'Placenta',
			(int) 76 => 'Testis',
			(int) 77 => 'Breast',
			(int) 78 => 'Kidney',
			(int) 79 => 'Placenta',
			(int) 80 => 'Testis',
			(int) 81 => 'Testis',
			(int) 82 => 'Adipose',
			(int) 83 => 'Adrenal',
			(int) 84 => 'Brain',
			(int) 85 => 'Breast',
			(int) 86 => 'Colon',
			(int) 87 => 'Heart',
			(int) 88 => 'Kidney',
			(int) 89 => 'Liver',
			(int) 90 => 'Lung',
			(int) 91 => 'Ovary',
			(int) 92 => 'Placenta',
			(int) 93 => 'Testis',
			(int) 94 => 'Adrenal',
			(int) 95 => 'Bladder',
			(int) 96 => 'Brain',
			(int) 97 => 'Breast',
			(int) 98 => 'Colon',
			(int) 99 => 'Heart',
			(int) 100 => 'Kidney',
			(int) 101 => 'Liver',
			(int) 102 => 'Lung',
			(int) 103 => 'Ovary',
			(int) 104 => 'Placenta',
			(int) 105 => 'Liver',
			(int) 106 => 'Lung',
			(int) 107 => 'Placenta',
			(int) 108 => 'Testis',
			(int) 109 => 'Adipose',
			(int) 110 => 'Adrenal',
			(int) 111 => 'Brain',
			(int) 112 => 'Breast',
			(int) 113 => 'Colon',
			(int) 114 => 'Kidney',
			(int) 115 => 'Liver',
			(int) 116 => 'Lung',
			(int) 117 => 'Ovary',
			(int) 118 => 'Placenta',
			(int) 119 => 'Testis',
			(int) 120 => 'Ovary',
			(int) 121 => 'Testis',
			(int) 122 => 'Bladder',
			(int) 123 => 'Colon',
			(int) 124 => 'Lung',
			(int) 125 => 'Placenta',
			(int) 126 => 'Testis',
			(int) 127 => 'Adipose',
			(int) 128 => 'Adrenal',
			(int) 129 => 'Breast',
			(int) 130 => 'Colon',
			(int) 131 => 'Kidney',
			(int) 132 => 'Ovary',
			(int) 133 => 'Placenta',
			(int) 134 => 'Testis',
			(int) 135 => 'Breast',
			(int) 136 => 'Colon',
			(int) 137 => 'Liver',
			(int) 138 => 'Lung',
			(int) 139 => 'Ovary',
			(int) 140 => 'Placenta',
			(int) 141 => 'Testis',
			(int) 142 => 'Adipose',
			(int) 143 => 'Adrenal',
			(int) 144 => 'Brain',
			(int) 145 => 'Breast',
			(int) 146 => 'Colon',
			(int) 147 => 'Heart',
			(int) 148 => 'Kidney',
			(int) 149 => 'Liver',
			(int) 150 => 'Lung',
			(int) 151 => 'Muscle',
			(int) 152 => 'Ovary',
			(int) 153 => 'Testis',
			(int) 154 => 'Adipose',
			(int) 155 => 'Adrenal',
			(int) 156 => 'Brain',
			(int) 157 => 'Colon',
			(int) 158 => 'Lung',
			(int) 159 => 'Ovary',
			(int) 160 => 'Placenta',
			(int) 161 => 'Testis',
			(int) 162 => 'Adipose',
			(int) 163 => 'Adrenal',
			(int) 164 => 'Brain',
			(int) 165 => 'Colon',
			(int) 166 => 'Testis'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0000YG_0003',
		'tax_id' => '10090',
		'chromosome' => '8',
		'seq_start' => '120736358',
		'seq_end' => '121088144',
		'region_length' => '351786',
		'region_type' => 'CGP',
		'el_id' => 'ENSMUSG00000041515-ENSMUSG00000042812'
	)
)
$gene_el = array(
	'ENST00000624955' => array(
		'Adrenal' => array(
			'average_FPKM' => '0.050',
			'stddev_FPKM' => '0.00'
		),
		'Brain' => array(
			'average_FPKM' => '0.056',
			'stddev_FPKM' => '0.00'
		),
		'Colon' => array(
			'average_FPKM' => '0.213',
			'stddev_FPKM' => '0.00'
		),
		'Testis' => array(
			'average_FPKM' => '0.023',
			'stddev_FPKM' => '0.00'
		)
	)
)
$gene_key = 'ENSG00000279604'
$is_first = false
$tran_el = array(
	'Adrenal' => array(
		'average_FPKM' => '0.050',
		'stddev_FPKM' => '0.00'
	),
	'Brain' => array(
		'average_FPKM' => '0.056',
		'stddev_FPKM' => '0.00'
	),
	'Colon' => array(
		'average_FPKM' => '0.213',
		'stddev_FPKM' => '0.00'
	),
	'Testis' => array(
		'average_FPKM' => '0.023',
		'stddev_FPKM' => '0.00'
	)
)
$tran_key = 'ENST00000624955'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Source ID		Type	Tax ID	Position
ENSMUSG00000041515-ENSMUSG00000042812		CGP	10090	8:120736358-121088144
Gene		Transcript	Position	Biotype