C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: upf1 regulator of nonsense transcripts homolog (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000016302 upf1 7955 + 2:56382690-56448130 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000021011 upf1-201 56382690-56448130 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000021011
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000021011 11.296±5.47 6.992±2.73 9.274±2.57 4.990±0.00 4.075±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003677 IEA DNA binding
GO:0004386 IEA helicase activity
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0009790 IMP embryo development
GO:0016787 IEA hydrolase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000005007 UPF1 UPF1 regulator of nonsense transcripts homolog (yeast) protein_coding Homo_sapiens
ENSMUSG00000058301 Upf1 UPF1 regulator of nonsense transcripts homolog (yeast) protein_coding Mus_musculus

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