C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: upf1 regulator of nonsense transcripts homolog (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000021011 upf1-201 ENSDARG00000016302 7955 + 2:56382690-56448130 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000021011
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000021011 11.296±5.47 6.992±2.73 9.274±2.57 4.990±0.00 4.075±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003677 IEA DNA binding
GO:0004386 IEA helicase activity
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0009790 IMP embryo development
GO:0016787 IEA hydrolase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075666 Upf1-201 protein_coding Mus_musculus 0 1978
ENST00000262803 UPF1-001 protein_coding Homo_sapiens 0 2848
ENST00000596842 UPF1-012 retained_intron Homo_sapiens 0 1068
ENST00000599848 UPF1-002 protein_coding Homo_sapiens 0 2132

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