C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled-coil domain containing 40
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000016813 ccdc40 7955 - 6:19617982-19659252 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000002617 ccdc40-201 19618359-19658907 protein_coding
  ENSDART00000140156 ccdc40-002 19636002-19636795 retained_intron
  ENSDART00000145154 ccdc40-001 19617982-19659252 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000002617ENSDART00000140156ENSDART00000145154
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000002617 0.459±0.02 0.457±0.29 0.649±0.00 N/A N/A
ENSDART00000140156 N/A N/A N/A 0.054±0.00 N/A
ENSDART00000145154 0.415±0.16 0.258±0.04 2.391±0.00 0.028±0.00 0.314±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001539 IMP ciliary or bacterial-type flagellar motility
GO:0001947 IMP heart looping
GO:0003143 IMP embryonic heart tube morphogenesis
GO:0003146 IMP heart jogging
GO:0003341 IMP cilium movement
GO:0003674 ND molecular_function
GO:0005737 ISS cytoplasm
GO:0005929 ISS cilium
GO:0007368 IMP determination of left/right symmetry
GO:0042384 IMP cilium assembly
GO:0042995 IEA cell projection
GO:0048793 IMP pronephros development
GO:0060287 IMP epithelial cilium movement involved in determination of left/right asymmetry
GO:0070286 ISS axonemal dynein complex assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000141519 CCDC40 coiled-coil domain containing 40 protein_coding Homo_sapiens
ENSMUSG00000039963 Ccdc40 coiled-coil domain containing 40 protein_coding Mus_musculus

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