C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled-coil domain containing 40
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141519 CCDC40 9606 + 17:80036632-80100613 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000269318 CCDC40-002 80036652-80067901 protein_coding
  ENST00000374876 CCDC40-003 80036658-80066770 protein_coding
  ENST00000374877 CCDC40-201 80036632-80090819 protein_coding
  ENST00000397545 CCDC40-001 80036636-80100613 protein_coding
  ENST00000571028 CCDC40-012 80058925-80067288 protein_coding
  ENST00000572083 CCDC40-010 80036664-80040535 retained_intron
  ENST00000572253 CCDC40-005 80081443-80097934 retained_intron
  ENST00000572270 CCDC40-008 80036652-80040165 processed_transcript
  ENST00000573474 CCDC40-011 80040005-80050224 nonsense_mediated_decay
  ENST00000573903 CCDC40-014 80088105-80092145 processed_transcript
  ENST00000574099 CCDC40-007 80036661-80040187 protein_coding
  ENST00000574799 CCDC40-004 80048370-80100604 retained_intron
  ENST00000574933 CCDC40-016 80087703-80088212 retained_intron
  ENST00000575431 CCDC40-013 80087514-80095337 retained_intron
  ENST00000576033 CCDC40-009 80036661-80040105 protein_coding
  ENST00000576241 CCDC40-015 80036677-80047454 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000269318ENST00000374876ENST00000374877ENST00000397545ENST00000572083ENST00000572253ENST00000572270ENST00000573474ENST00000574799ENST00000575431ENST00000576241
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000269318 N/A N/A N/A N/A N/A 0.436±0.00 0.896±0.00 0.195±0.00 1.301±0.00 N/A N/A 0.102±0.00 N/A
ENST00000374876 N/A 0.464±0.00 N/A N/A N/A N/A N/A N/A N/A 0.103±0.00 0.494±0.00 0.335±0.00 N/A
ENST00000374877 N/A N/A 0.333±0.00 N/A 0.052±0.00 N/A N/A N/A N/A N/A 1.032±0.00 0.037±0.00 N/A
ENST00000397545 N/A 0.240±0.00 0.472±0.00 N/A 0.296±0.00 0.166±0.00 0.830±0.00 0.177±0.05 2.752±0.00 0.098±0.00 3.705±0.00 N/A 5.716±1.66
ENST00000572083 0.212±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572253 N/A 0.182±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.285±0.00 N/A N/A
ENST00000572270 N/A N/A N/A N/A N/A 0.298±0.00 N/A N/A N/A 0.446±0.00 0.865±0.00 N/A N/A
ENST00000573474 N/A N/A 1.776±0.00 N/A 1.339±0.00 0.715±0.00 0.738±0.00 0.961±0.00 N/A N/A 2.729±0.00 0.329±0.13 N/A
ENST00000574799 N/A N/A N/A 0.880±0.00 N/A 0.154±0.00 N/A 0.120±0.04 0.190±0.00 N/A 1.300±0.97 0.083±0.00 5.966±4.53
ENST00000575431 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.287±0.00 0.138±0.00 N/A
ENST00000576241 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.382±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000040 CIL_000040_0001 CGP 17:79932343-80100613
CIL_00003V CIL_00003V_0001 CGP 17:80036632-80119879

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001947 IMP heart looping
GO:0003341 IEA cilium movement
GO:0003351 IMP epithelial cilium movement
GO:0003356 IMP regulation of cilium beat frequency
GO:0003674 ND molecular_function
GO:0005737 ISS cytoplasm
GO:0005929 ISS cilium
GO:0030324 IMP lung development
GO:0035469 IMP determination of pancreatic left/right asymmetry
GO:0060287 IMP epithelial cilium movement involved in determination of left/right asymmetry
GO:0070286 IMP axonemal dynein complex assembly
GO:0071907 IMP determination of digestive tract left/right asymmetry
GO:0071910 IMP determination of liver left/right asymmetry

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016813 ccdc40 coiled-coil domain containing 40 protein_coding Danio_rerio
ENSMUSG00000039963 Ccdc40 coiled-coil domain containing 40 protein_coding Mus_musculus

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