C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: valosin containing protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000020008 vcp 7955 + 5:43128969-43139562 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000023779 vcp-001 43128969-43139562 protein_coding
  ENSDART00000134317 vcp-004 43129003-43132982 processed_transcript
  ENSDART00000136601 vcp-010 43134797-43139135 processed_transcript
  ENSDART00000142850 vcp-007 43134815-43139139 processed_transcript
  ENSDART00000143654 vcp-009 43134785-43139129 processed_transcript
  ENSDART00000144213 vcp-006 43134793-43138038 processed_transcript
  ENSDART00000147012 vcp-008 43135098-43139153 processed_transcript
  ENSDART00000148085 vcp-011 43133093-43139401 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000023779
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000023779 84.775±7.17 39.377±40.55 52.746±40.35 17.976±0.00 56.700±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005829 IEA cytosol
GO:0006281 IEA DNA repair
GO:0006302 ISS double-strand break repair
GO:0006310 IEA DNA recombination
GO:0006810 IEA transport
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0007049 IEA cell cycle
GO:0008289 IEA lipid binding
GO:0009378 IEA four-way junction helicase activity
GO:0009790 IMP embryo development
GO:0016567 ISS protein ubiquitination
GO:0016787 IEA hydrolase activity
GO:0016887 IEA ATPase activity
GO:0017111 IEA nucleoside-triphosphatase activity
GO:0018279 ISS protein N-linked glycosylation via asparagine
GO:0019985 ISS translesion synthesis
GO:0030433 ISS ER-associated ubiquitin-dependent protein catabolic process
GO:0035861 ISS site of double-strand break
GO:2000058 IMP regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000165280 VCP valosin containing protein protein_coding Homo_sapiens
ENSMUSG00000028452 Vcp valosin containing protein protein_coding Mus_musculus

Loading