C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: valosin containing protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000023779 vcp-001 ENSDARG00000020008 7955 + 5:43128969-43139562 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000023779
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000023779 84.775±7.17 39.377±40.55 52.746±40.35 17.976±0.00 56.700±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005829 IEA cytosol
GO:0006281 IEA DNA repair
GO:0006302 ISS double-strand break repair
GO:0006310 IEA DNA recombination
GO:0006810 IEA transport
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0007049 IEA cell cycle
GO:0008289 IEA lipid binding
GO:0009378 IEA four-way junction helicase activity
GO:0009790 IMP embryo development
GO:0016567 ISS protein ubiquitination
GO:0016787 IEA hydrolase activity
GO:0016887 IEA ATPase activity
GO:0017111 IEA nucleoside-triphosphatase activity
GO:0018279 ISS protein N-linked glycosylation via asparagine
GO:0019985 ISS translesion synthesis
GO:0030433 ISS ER-associated ubiquitin-dependent protein catabolic process
GO:0035861 ISS site of double-strand break
GO:2000058 IMP regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358901 VCP-001 protein_coding Homo_sapiens 0 1956
ENST00000448530 VCP-006 protein_coding Homo_sapiens 0 468
ENST00000493886 VCP-005 retained_intron Homo_sapiens 0 769

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