C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif-containing 54
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000029907 trim54 7955 - 20:38755000-38783506 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000049430 trim54-201 38755002-38783506 protein_coding
  ENSDART00000061394 trim54-001 38755000-38783506 protein_coding
  ENSDART00000140275 trim54-002 38768262-38771598 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000049430ENSDART00000061394ENSDART00000140275
Transcript ID Brain Heart Kidney Muscle
ENSDART00000049430 N/A 0.267±0.00 N/A N/A
ENSDART00000061394 0.152±0.04 0.249±0.11 0.676±0.46 1.206±0.00
ENSDART00000140275 0.251±0.00 0.385±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0008270 IEA zinc ion binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000138100 TRIM54 tripartite motif containing 54 protein_coding Homo_sapiens
ENSMUSG00000062077 Trim54 tripartite motif-containing 54 protein_coding Mus_musculus

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