C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif-containing 54
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000062077 Trim54 10090 + 5:31116712-31137630 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000013771 Trim54-001 31116712-31137628 protein_coding
  ENSMUST00000114637 Trim54-002 31116734-31137630 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyLiverLungMusclePlacentaTestisENSMUST00000013771ENSMUST00000114637
Transcript ID Brain Breast Heart Kidney Liver Lung Muscle Placenta Testis
ENSMUST00000013771 N/A 21.662±8.95 74.584±15.93 1.285±0.30 0.126±0.11 3.356±2.18 158.283±21.93 0.022±0.00 3.308±0.78
ENSMUST00000114637 0.145±0.17 5.736±0.00 N/A 0.073±0.00 0.012±0.00 0.936±0.00 N/A 0.027±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EE CIL_0000EE_0002 CGP 5:31106285-31137630
CIL_0000ED CIL_0000ED_0002 CGP 5:31116712-31138829

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0005874 IEA microtubule
GO:0005875 IDA microtubule associated complex
GO:0007026 IDA negative regulation of microtubule depolymerization
GO:0007275 IEA multicellular organismal development
GO:0008017 IDA microtubule binding
GO:0008270 IEA zinc ion binding
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029907 trim54 tripartite motif-containing 54 protein_coding Danio_rerio
ENSG00000138100 TRIM54 tripartite motif containing 54 protein_coding Homo_sapiens

Loading