C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif containing 54
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000138100 TRIM54 9606 + 2:27282392-27307439 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000296098 TRIM54-001 27282462-27307439 protein_coding
  ENST00000380075 TRIM54-002 27282392-27307435 protein_coding
  ENST00000485306 TRIM54-004 27305185-27306261 retained_intron
  ENST00000488321 TRIM54-003 27304691-27305779 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000296098ENST00000380075ENST00000485306ENST00000488321
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000296098 0.070±0.00 0.243±0.00 0.486±0.00 1.464±0.00 0.128±0.00 N/A 0.293±0.00 N/A N/A 0.041±0.00 0.031±0.00 2.284±0.00
ENST00000380075 N/A N/A 0.207±0.00 3.084±2.55 N/A 42.864±30.03 1.027±0.00 0.275±0.00 85.273±49.30 0.148±0.00 0.249±0.20 7.322±0.15
ENST00000485306 N/A N/A N/A N/A N/A N/A N/A 0.066±0.00 N/A N/A N/A N/A
ENST00000488321 N/A N/A N/A N/A N/A N/A N/A 0.207±0.00 N/A N/A 0.099±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EE CIL_0000EE_0001 CGP 2:27275421-27307439
CIL_0000ED CIL_0000ED_0001 CGP 2:27282392-27308445

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004871 NAS signal transducer activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005737 IEA cytoplasm
GO:0005874 NAS microtubule
GO:0005875 IEA microtubule associated complex
GO:0007017 NAS microtubule-based process
GO:0007026 NAS negative regulation of microtubule depolymerization
GO:0007165 NAS signal transduction
GO:0007275 IEA multicellular organismal development
GO:0008017 IEA microtubule binding
GO:0008270 NAS:IEA zinc ion binding
GO:0030154 IEA cell differentiation
GO:0046417 IEA chorismate metabolic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029907 trim54 tripartite motif-containing 54 protein_coding Danio_rerio
ENSMUSG00000062077 Trim54 tripartite motif-containing 54 protein_coding Mus_musculus

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