C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: orthodenticle homolog 1a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000030703 otx1a 7955 + 1:51430588-51439279 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000006538 otx1a-001 51430588-51439279 protein_coding
  ENSDART00000150420 otx1a-002 51430628-51433791 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartMuscleENSDART00000006538ENSDART00000150420
Transcript ID Brain Heart Muscle
ENSDART00000006538 0.603±0.39 0.114±0.03 N/A
ENSDART00000150420 0.915±0.00 N/A 0.192±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003406 IGI retinal pigment epithelium development
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0007275 IEA multicellular organismal development
GO:0030901 IGI midbrain development
GO:0030902 IGI hindbrain development
GO:0030917 IGI midbrain-hindbrain boundary development
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000115507 OTX1 orthodenticle homeobox 1 protein_coding Homo_sapiens
ENSMUSG00000005917 Otx1 orthodenticle homolog 1 protein_coding Mus_musculus

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