C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeo box A3a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000036231 hoxa3a 7955 + 19:19220695-19245990 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000052633 hoxa3a-002 19227928-19245990 protein_coding
  ENSDART00000080466 hoxa3a-009 19233312-19235118 protein_coding
  ENSDART00000129600 hoxa3a-008 19221922-19226649 processed_transcript
  ENSDART00000135423 hoxa3a-007 19220695-19234418 processed_transcript
  ENSDART00000137735 hoxa3a-004 19238609-19243530 protein_coding
  ENSDART00000138905 hoxa3a-006 19222170-19243455 protein_coding
  ENSDART00000144019 hoxa3a-005 19241502-19243760 protein_coding
  ENSDART00000146993 hoxa3a-001 19243182-19245990 protein_coding
  ENSDART00000147360 hoxa3a-003 19227711-19243464 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000052633ENSDART00000080466ENSDART00000129600ENSDART00000137735ENSDART00000144019ENSDART00000146993
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000052633 N/A 0.134±0.08 2.386±0.88 N/A N/A
ENSDART00000080466 1.068±0.44 0.529±0.00 0.966±0.00 0.036±0.00 1.499±0.00
ENSDART00000129600 N/A 0.136±0.00 N/A N/A N/A
ENSDART00000137735 N/A 0.277±0.03 N/A 0.117±0.00 N/A
ENSDART00000144019 0.372±0.00 N/A N/A N/A N/A
ENSDART00000146993 0.267±0.03 0.112±0.07 0.364±0.00 0.046±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0006 UCNEbase 19:19094506-19320701
CIL_0006I0 CIL_0006I0_0001 CGP 19:19213175-19227976

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0007275 IEA multicellular organismal development
GO:0043565 IEA sequence-specific DNA binding

Homologs

No Homologs available.

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