C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000038687 nfkb2 7955 + 13:22857578-22875759 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000057672 nfkb2-002 22860001-22865594 protein_coding
  ENSDART00000078289 nfkb2-201 22858253-22875756 protein_coding
  ENSDART00000133064 nfkb2-003 22871568-22873877 protein_coding
  ENSDART00000134122 nfkb2-001 22857578-22875759 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000078289ENSDART00000134122
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000078289 2.818±0.78 3.371±2.73 5.188±1.95 0.282±0.00 2.899±0.00
ENSDART00000134122 1.549±1.00 4.890±3.05 10.963±0.00 0.555±0.00 0.408±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001HR CIL_0001HR_0001 CGP 13:22857578-22921528

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0007165 IEA signal transduction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000077150 NFKB2 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) protein_coding Homo_sapiens
ENSMUSG00000025225 Nfkb2 nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100 protein_coding Mus_musculus

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