C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000040890 fdps 7955 + 16:15758339-15788119 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000059928 fdps-002 15775230-15787126 protein_coding
  ENSDART00000122272 fdps-001 15775014-15788119 protein_coding
  ENSDART00000130353 fdps-003 15758339-15787163 protein_coding
  ENSDART00000142815 fdps-004 15775160-15776584 retained_intron
  ENSDART00000156064 fdps-201 15775185-15788119 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000059928ENSDART00000122272ENSDART00000130353ENSDART00000156064
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000059928 N/A N/A N/A 0.219±0.00 4.515±0.00
ENSDART00000122272 6.218±2.61 3.976±0.75 4.757±0.00 0.191±0.00 4.775±0.00
ENSDART00000130353 N/A 3.108±0.21 N/A 0.112±0.00 N/A
ENSDART00000156064 5.164±1.34 17.062±14.06 19.495±10.49 N/A 8.967±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000D0 CIL_0000D0_0001 CGP 16:15758339-15824231

Gene Ontology
GO IDEvidence TypeGO Description
GO:0008299 IEA isoprenoid biosynthetic process
GO:0016740 IEA transferase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000160752 FDPS farnesyl diphosphate synthase protein_coding Homo_sapiens
ENSMUSG00000059743 Fdps farnesyl diphosphate synthetase protein_coding Mus_musculus

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