C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: farnesyl diphosphate synthase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000160752 FDPS 9606 + 1:155308748-155320666 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000356657 FDPS-001 155308916-155320665 protein_coding
  ENST00000368356 FDPS-002 155308852-155320665 protein_coding
  ENST00000447866 FDPS-021 155308794-155320609 protein_coding
  ENST00000461507 FDPS-012 155308803-155318663 retained_intron
  ENST00000465559 FDPS-007 155308959-155317982 protein_coding
  ENST00000467076 FDPS-020 155308889-155320647 protein_coding
  ENST00000468479 FDPS-003 155308755-155319688 processed_transcript
  ENST00000470171 FDPS-008 155308968-155318814 processed_transcript
  ENST00000471117 FDPS-013 155308863-155318473 retained_intron
  ENST00000474345 FDPS-010 155308854-155318287 nonsense_mediated_decay
  ENST00000477057 FDPS-009 155308985-155318928 processed_transcript
  ENST00000487002 FDPS-005 155308914-155312979 retained_intron
  ENST00000489003 FDPS-011 155308984-155318687 retained_intron
  ENST00000489324 FDPS-018 155319655-155320609 retained_intron
  ENST00000490140 FDPS-017 155318719-155320665 retained_intron
  ENST00000491013 FDPS-004 155308914-155318905 protein_coding
  ENST00000492244 FDPS-015 155318188-155320665 processed_transcript
  ENST00000492887 FDPS-016 155318175-155319885 retained_intron
  ENST00000495308 FDPS-014 155308893-155318518 retained_intron
  ENST00000611010 FDPS-201 155308748-155320666 protein_coding
  ENST00000612683 FDPS-019 155308970-155320637 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000356657ENST00000368356ENST00000447866ENST00000467076ENST00000468479ENST00000477057ENST00000490140ENST00000492244
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000356657 N/A N/A N/A N/A 3.659±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000368356 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.835±0.00 N/A N/A N/A N/A
ENST00000447866 N/A N/A N/A 11.914±0.00 5.582±0.00 7.986±0.00 5.603±4.42 N/A 1.293±0.00 4.027±0.00 1.772±0.00 27.455±20.17 26.161±11.82 16.809±0.00
ENST00000467076 20.226±0.00 38.393±0.00 5.968±0.00 23.223±0.00 25.850±0.00 11.491±4.99 1.692±0.00 30.023±0.29 22.082±20.56 26.844±21.30 5.908±1.68 44.289±35.42 49.871±12.37 N/A
ENST00000468479 26.729±0.00 48.955±0.00 N/A 28.072±0.00 26.899±0.00 18.802±0.00 7.213±4.49 49.260±0.00 N/A N/A 4.565±0.00 64.493±23.94 72.383±0.00 42.611±7.08
ENST00000477057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 75.749±0.00 34.024±0.00 N/A
ENST00000490140 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.924±0.00 N/A N/A N/A
ENST00000492244 N/A N/A N/A N/A N/A N/A N/A N/A 3.136±0.00 N/A N/A 11.296±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000D0 CIL_0000D0_0002 CGP 1:155308748-155331114

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004161 IEA dimethylallyltranstransferase activity
GO:0004337 IEA geranyltranstransferase activity
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005829 TAS cytosol
GO:0006695 TAS cholesterol biosynthetic process
GO:0008299 IEA isoprenoid biosynthetic process
GO:0016032 IEA viral process
GO:0033384 IEA geranyl diphosphate biosynthetic process
GO:0044281 TAS small molecule metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045337 IEA farnesyl diphosphate biosynthetic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040890 fdps farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase) protein_coding Danio_rerio
ENSMUSG00000059743 Fdps farnesyl diphosphate synthetase protein_coding Mus_musculus

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