C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: finTRIM family, member 53
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000041220 ftr53 7955 - 9:17927388-17933884 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000060425 ftr53-201 17927388-17933820 protein_coding
  ENSDART00000130995 ftr53-003 17931459-17933846 nonsense_mediated_decay
  ENSDART00000141997 ftr53-001 17931643-17933884 protein_coding

Danio rerio EnsemblZv9

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverENSDART00000060425ENSDART00000130995ENSDART00000141997
Transcript ID Brain Heart Kidney Liver
ENSDART00000060425 0.061±0.01 0.337±0.05 0.408±0.00 N/A
ENSDART00000130995 0.337±0.00 N/A 0.130±0.07 0.203±0.00
ENSDART00000141997 0.057±0.00 N/A N/A 0.114±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000151 IEA ubiquitin ligase complex
GO:0004842 IEA ubiquitin-protein ligase activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000132481 TRIM47 tripartite motif containing 47 protein_coding Homo_sapiens
ENSMUSG00000020773 Trim47 tripartite motif-containing 47 protein_coding Mus_musculus

Loading