C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000041481 smg5 7955 + 16:48757476-48798276 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000060809 smg5-001 48757476-48798276 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverMuscleENSDART00000060809
Transcript ID Brain Heart Liver Muscle
ENSDART00000060809 0.542±0.00 0.358±0.00 1.398±0.00 2.455±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00064M CIL_00064M_0001 CGP 16:48757476-48848780

Gene Ontology
GO IDEvidence TypeGO Description
GO:0009790 IMP embryo development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000198952 SMG5 SMG5 nonsense mediated mRNA decay factor protein_coding Homo_sapiens
ENSMUSG00000001415 Smg5 Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans) protein_coding Mus_musculus

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