C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: opsin 1 (cone pigments), long-wave-sensitive, 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000044861 opn1lw2 7955 + 11:26414605-26416765 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000065940 opn1lw2-001 26414605-26416765 protein_coding
  ENSDART00000132277 opn1lw2-004 26414666-26416529 processed_transcript
  ENSDART00000140746 opn1lw2-002 26414674-26415762 retained_intron
  ENSDART00000144302 opn1lw2-003 26414666-26415796 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartENSDART00000065940ENSDART00000140746ENSDART00000144302
Transcript ID Brain Heart
ENSDART00000065940 0.130±0.06 N/A
ENSDART00000140746 N/A 0.338±0.00
ENSDART00000144302 N/A 0.081±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GD CIL_0007GD_0001 CGP 11:26411202-26416765

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004871 IEA signal transducer activity
GO:0004930 IEA G-protein coupled receptor activity
GO:0007165 IEA signal transduction
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0007601 IEA visual perception
GO:0007602 IEA phototransduction
GO:0009881 IEA photoreceptor activity
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0018298 IEA protein-chromophore linkage
GO:0050896 IEA response to stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000102076 OPN1LW opsin 1 (cone pigments), long-wave-sensitive protein_coding Homo_sapiens
ENSG00000166160 OPN1MW2 opsin 1 (cone pigments), medium-wave-sensitive 2 protein_coding Homo_sapiens
ENSG00000268221 OPN1MW opsin 1 (cone pigments), medium-wave-sensitive protein_coding Homo_sapiens
ENSG00000269433 OPN1MW opsin 1 (cone pigments), medium-wave-sensitive protein_coding Homo_sapiens
ENSMUSG00000031394 Opn1mw opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan) protein_coding Mus_musculus

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