C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031394 Opn1mw 10090 + X:74127464-74150760 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000033771 Opn1mw-001 74127464-74150760 protein_coding
  ENSMUST00000101457 Opn1mw-002 74127466-74150751 protein_coding
  ENSMUST00000123401 Opn1mw-005 74137903-74150756 processed_transcript
  ENSMUST00000127445 Opn1mw-006 74138421-74150756 protein_coding
  ENSMUST00000135307 Opn1mw-003 74127481-74143549 processed_transcript
  ENSMUST00000145443 Opn1mw-004 74137924-74139866 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastHeartKidneyLiverMuscleOvaryPlacentaENSMUST00000033771ENSMUST00000101457ENSMUST00000123401ENSMUST00000127445ENSMUST00000135307ENSMUST00000145443
Transcript ID Adrenal Bladder Brain Breast Heart Kidney Liver Muscle Ovary Placenta
ENSMUST00000033771 N/A 0.011±0.00 0.030±0.03 0.183±0.08 0.011±0.00 0.026±0.01 0.008±0.00 0.117±0.06 N/A 0.013±0.00
ENSMUST00000101457 N/A 0.003±0.00 0.001±0.00 N/A 0.011±0.00 0.003±0.00 N/A N/A N/A N/A
ENSMUST00000123401 N/A N/A N/A N/A N/A N/A N/A 0.109±0.03 N/A N/A
ENSMUST00000127445 N/A N/A N/A 0.321±0.16 N/A N/A N/A 0.201±0.10 0.257±0.00 0.236±0.13
ENSMUST00000135307 0.131±0.00 N/A N/A N/A N/A N/A N/A 0.136±0.03 N/A 0.356±0.35
ENSMUST00000145443 N/A N/A N/A N/A N/A 0.172±0.00 N/A 0.170±0.07 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GC CIL_0007GC_0003 CGP X:74013914-74135363
CIL_0001LD CIL_0001LD_0002 CGP X:74026592-74150760
CIL_00032W CIL_00032W_0002 CGP X:74127464-74167838

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001750 IDA photoreceptor outer segment
GO:0004930 IEA G-protein coupled receptor activity
GO:0005515 IPI protein binding
GO:0005886 ISS plasma membrane
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0007601 IEA visual perception
GO:0007602 IEA phototransduction
GO:0009881 IEA photoreceptor activity
GO:0016021 IEA integral component of membrane
GO:0018298 IEA protein-chromophore linkage

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044861 opn1lw2 opsin 1 (cone pigments), long-wave-sensitive, 2 protein_coding Danio_rerio
ENSDARG00000044862 opn1lw1 opsin 1 (cone pigments), long-wave-sensitive, 1 protein_coding Danio_rerio
ENSG00000102076 OPN1LW opsin 1 (cone pigments), long-wave-sensitive protein_coding Homo_sapiens
ENSG00000166160 OPN1MW2 opsin 1 (cone pigments), medium-wave-sensitive 2 protein_coding Homo_sapiens
ENSG00000268221 OPN1MW opsin 1 (cone pigments), medium-wave-sensitive protein_coding Homo_sapiens
ENSG00000269433 OPN1MW opsin 1 (cone pigments), medium-wave-sensitive protein_coding Homo_sapiens

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