C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vesicle transport through interaction with t-SNAREs homolog 1A (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000045065 vti1a 7955 - 12:32845793-33109637 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000066256 vti1a-001 32848665-33109637 protein_coding
  ENSDART00000153172 vti1a-003 33020187-33109566 protein_coding
  ENSDART00000154255 vti1a-201 32845793-33109635 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000066256ENSDART00000154255
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000066256 N/A 1.318±0.00 4.277±0.00 0.466±0.00 1.274±0.00
ENSDART00000154255 13.999±9.52 6.808±1.94 1.711±0.00 0.626±0.00 4.503±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007PE CIL_0007PE_0003 UCNEbase 12:32666838-33035664

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0006886 IEA intracellular protein transport
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000151532 VTI1A vesicle transport through interaction with t-SNAREs 1A protein_coding Homo_sapiens
ENSMUSG00000024983 Vti1a vesicle transport through interaction with t-SNAREs 1A protein_coding Mus_musculus

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