C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vesicle transport through interaction with t-SNAREs 1A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000151532 VTI1A 9606 + 10:112446998-112818744 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000393077 VTI1A-001 112447258-112818744 protein_coding
  ENST00000432306 VTI1A-009 112447258-112737784 protein_coding
  ENST00000472892 VTI1A-003 112446999-112449659 processed_transcript
  ENST00000480057 VTI1A-006 112447359-112527405 processed_transcript
  ENST00000483122 VTI1A-002 112446998-112450726 processed_transcript
  ENST00000489142 VTI1A-005 112447234-112485291 processed_transcript
  ENST00000489357 VTI1A-007 112447349-112538301 processed_transcript
  ENST00000494728 VTI1A-004 112447276-112464758 processed_transcript
  ENST00000496445 VTI1A-008 112447264-112538646 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000393077ENST00000432306ENST00000483122ENST00000489357ENST00000496445
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000393077 3.813±0.00 2.757±0.00 1.484±0.00 2.410±0.07 3.806±0.36 2.557±0.60 1.818±0.49 3.015±1.59 2.271±0.94 2.333±0.13 1.582±0.62 2.424±1.00 2.332±0.17 2.949±0.30
ENST00000432306 N/A N/A 2.247±0.00 N/A N/A N/A 1.254±0.00 N/A N/A 1.868±0.00 N/A 2.001±0.00 N/A N/A
ENST00000483122 N/A 1.458±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.400±0.77 N/A N/A
ENST00000489357 N/A N/A N/A 7.389±0.00 N/A N/A N/A 3.013±0.00 N/A N/A 1.674±0.00 8.490±0.00 7.403±0.00 14.212±0.00
ENST00000496445 N/A N/A N/A N/A 6.563±0.00 5.051±0.00 N/A N/A N/A 4.390±0.00 N/A 5.225±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093P CIL_00093P_0001 VISTA 10:112343926-112944807
CIL_0006OV CIL_0006OV_0001 CGP 10:112430300-112818744
CIL_0006OU CIL_0006OU_0001 CGP 10:112446998-113167678

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005484 IDA SNAP receptor activity
GO:0005515 IEA protein binding
GO:0005768 ISS endosome
GO:0005794 IDA Golgi apparatus
GO:0006886 IEA intracellular protein transport
GO:0006888 ISS ER to Golgi vesicle-mediated transport
GO:0008021 ISS synaptic vesicle
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0030136 ISS clathrin-coated vesicle
GO:0031201 ISS SNARE complex
GO:0042147 IDA retrograde transport, endosome to Golgi
GO:0043025 ISS neuronal cell body
GO:0044306 ISS neuron projection terminus
GO:0048280 ISS vesicle fusion with Golgi apparatus
GO:0048471 ISS perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045065 vti1a vesicle transport through interaction with t-SNAREs homolog 1A (yeast) protein_coding Danio_rerio
ENSMUSG00000024983 Vti1a vesicle transport through interaction with t-SNAREs 1A protein_coding Mus_musculus

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